View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6118_low_18 (Length: 280)

Name: NF6118_low_18
Description: NF6118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6118_low_18
NF6118_low_18
[»] chr6 (36 HSPs)
chr6 (92-272)||(5100680-5100860)
chr6 (92-272)||(5135781-5135961)
chr6 (101-265)||(5351662-5351818)
chr6 (142-240)||(5398379-5398477)
chr6 (156-231)||(5255975-5256050)
chr6 (132-240)||(5242332-5242438)
chr6 (147-222)||(5439361-5439436)
chr6 (141-231)||(5180635-5180725)
chr6 (1-93)||(5286175-5286267)
chr6 (142-222)||(5352700-5352780)
chr6 (1-93)||(5692163-5692255)
chr6 (162-240)||(5334453-5334532)
chr6 (153-231)||(5448965-5449043)
chr6 (178-231)||(5283100-5283153)
chr6 (35-93)||(5075817-5075875)
chr6 (1-93)||(5104924-5105016)
chr6 (1-93)||(5133957-5134049)
chr6 (1-93)||(5444941-5445033)
chr6 (1-93)||(5069123-5069215)
chr6 (141-229)||(5155843-5155931)
chr6 (1-93)||(5262195-5262287)
chr6 (1-93)||(5348269-5348361)
chr6 (26-93)||(5149039-5149106)
chr6 (1-93)||(5093899-5093991)
chr6 (1-93)||(5159553-5159645)
chr6 (1-93)||(5356668-5356760)
chr6 (1-93)||(5368318-5368410)
chr6 (92-138)||(5098464-5098510)
chr6 (1-94)||(5184004-5184097)
chr6 (92-140)||(5242506-5242554)
chr6 (1-93)||(5341552-5341644)
chr6 (1-93)||(5394901-5394993)
chr6 (1-93)||(5423611-5423703)
chr6 (23-93)||(5431265-5431335)
chr6 (95-140)||(5156007-5156052)
chr6 (95-140)||(5372353-5372398)
[»] chr4 (13 HSPs)
chr4 (32-93)||(25567861-25567922)
chr4 (11-93)||(4126499-4126581)
chr4 (11-93)||(4323164-4323246)
chr4 (11-93)||(4358268-4358350)
chr4 (11-93)||(4333410-4333492)
chr4 (23-93)||(4342800-4342870)
chr4 (18-62)||(4351120-4351164)
chr4 (11-72)||(4330368-4330429)
chr4 (10-93)||(7888807-7888890)
chr4 (35-93)||(4135630-4135688)
chr4 (92-138)||(25569096-25569142)
chr4 (92-140)||(4132612-4132660)
chr4 (92-140)||(4319296-4319344)
[»] chr3 (4 HSPs)
chr3 (154-229)||(47985223-47985298)
chr3 (154-229)||(47994510-47994585)
chr3 (154-229)||(48003797-48003872)
chr3 (154-229)||(48013082-48013157)
[»] scaffold1476 (1 HSPs)
scaffold1476 (199-264)||(163-228)
[»] chr2 (2 HSPs)
chr2 (195-264)||(22583209-22583280)
chr2 (1-93)||(22586367-22586459)
[»] scaffold0294 (1 HSPs)
scaffold0294 (143-195)||(7741-7793)


Alignment Details
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 36)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 92 - 272
Target Start/End: Complemental strand, 5100860 - 5100680
Alignment:
Q  92 cagtttcaatgtgaaaaagacagcagtttatctcgtatacgatgaaccatctgtcaagagattctctactgaagaggagcccactgatgacttcaatcag 191  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5100860 cagtttcattgtgaaaaagacagcagtttatctcgtatacgatgaaccatctgtcaagagattctctactgaagaggagcccactgatgacttcaatcag 5100761  T
Q  192 aacagaaagaagaaaaaccgagtggaatgaatcaatgaaagatagtaaagcgatggccgagcaaaaatcaatttgatgatg 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||    
T  5100760 aacagaaagaagaaaaaccgagtggaatgaatcaatgaaagatagtaatgcaatggccgagcaaaaatcaattttatgatg 5100680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 92 - 272
Target Start/End: Complemental strand, 5135961 - 5135781
Alignment:
Q  92 cagtttcaatgtgaaaaagacagcagtttatctcgtatacgatgaaccatctgtcaagagattctctactgaagaggagcccactgatgacttcaatcag 191  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5135961 cagtttcattgtgaaaaagacagcagtttatctcgtatacgatgaaccatctgtcaagagattctctactgaagaggagcccaatgatgacttcaatcag 5135862  T
Q  192 aacagaaagaagaaaaaccgagtggaatgaatcaatgaaagatagtaaagcgatggccgagcaaaaatcaatttgatgatg 272  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||    
T  5135861 aacagaaagaagaaaaaccgagtggaatgaatcaatggaagatagtaaagcaatggccgagcaaaaatcaattttatgatg 5135781  T

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Target: chr6; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 101 - 265
Target Start/End: Original strand, 5351662 - 5351818
Alignment:
Q  101 tgtgaaaaagacagcagtttatctcgtatacgatgaaccatctgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaag 200  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  5351662 tgtgaaaaagacagtagtttatctcgtatatgatgaaccatctgtcaagagattctctactgaagaggagcccactgatgaccttaatcagaacagaaag 5351761  T
Q  201 aagaaaaaccgagtggaatgaatcaatgaaagatagtaaagcgatggccgagcaaaaatcaattt 265  Q
    ||||||||| ||||||        | |||||||||||||||| ||||| ||||||||||||||||    
T  5351762 aagaaaaactgagtgg--------attgaaagatagtaaagcaatggcggagcaaaaatcaattt 5351818  T

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Target: chr6; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 5398379 - 5398477
Alignment:
Q  142 ctgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaagatagtaaa 240  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||| |||||    
T  5398379 ctgtcaagagattctctactgaagatgagcccactgatgacttcaatcagaaaagaaagaagaaaagccgagttgaatgaatcaatgaaagatggtaaa 5398477  T

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Target: chr6; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 5256050 - 5255975
Alignment:
Q  156 tctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 231  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5256050 tctactgaagaggagcccactgatgatttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 5255975  T

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Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 132 - 240
Target Start/End: Complemental strand, 5242438 - 5242332
Alignment:
Q  132 gatgaaccatctgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 231  Q
    |||||||  ||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||  |||||||| ||||||||||| ||||||||||    
T  5242438 gatgaacgctctgtcaagagattctctactgaagaggagcctgctgatgacttcaatcagaacggaa--aagaaaaatcgagtggaatgtatcaatgaaa 5242341  T
Q  232 gatagtaaa 240  Q
    ||| |||||    
T  5242340 gatggtaaa 5242332  T

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Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 5439361 - 5439436
Alignment:
Q  147 aagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaa 222  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||    
T  5439361 aagagattctctactggagaggagcccactgatgacttcaatcggaacagaaagaagaaaaatcgaatggaatgaa 5439436  T

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Target: chr6; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 5180725 - 5180635
Alignment:
Q  141 tctgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 231  Q
    ||||| |||||||||||| ||||||| || | | | || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5180725 tctgtgaagagattctctgctgaagacgaacacgccgacgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 5180635  T

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Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 5286175 - 5286267
Alignment:
Q  1 atttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 93  Q
    |||||| | ||||||| |||||||||||||| ||||||| ||||||||||||||||||| ||| || ||||||||||| || |||||||||||    
T  5286175 atttgcaaggaagctcctaccatcaaaattgcggccaatcttattgtaaatggcttttgtaatggttgtttttccaattccccccatacccca 5286267  T

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Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 5352780 - 5352700
Alignment:
Q  142 ctgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaa 222  Q
    |||||||||||||||||| ||||||||||| |||||| ||  ||||||||||||||||||||||||| ||| |||||||||    
T  5352780 ctgtcaagagattctctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaaatcgaatggaatgaa 5352700  T

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Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 5692163 - 5692255
Alignment:
Q  1 atttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 93  Q
    |||||| | ||||||| | || ||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| |||||    
T  5692163 atttgcaaggaagctccttccttcaaaattgcggccaattttattgtaaatggcttttgcaatggtggttttgccaattcctcccatgcccca 5692255  T

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Target: chr6; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 5334453 - 5334532
Alignment:
Q  162 gaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaacc-gagtggaatgaatcaatgaaagatagtaaa 240  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||| || |||||||||||||| ||||||||| |||||    
T  5334453 gaagatgagcccactgatgacttcaatgagaacagaaagaagaaaagcctgagtggaatgaatctatgaaagatggtaaa 5334532  T

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Target: chr6; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 5448965 - 5449043
Alignment:
Q  153 ttctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 231  Q
    |||||||||||||| || ||| | |||||||||||||||||||||||||||||||| | ||| ||||||||||||||||    
T  5448965 ttctctactgaagacgatcccgcagatgacttcaatcagaacagaaagaagaaaaatcaagtagaatgaatcaatgaaa 5449043  T

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Target: chr6; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 5283153 - 5283100
Alignment:
Q  178 atgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 231  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5283153 atgacttcactcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 5283100  T

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Target: chr6; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 5075817 - 5075875
Alignment:
Q  35 ccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 93  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||    
T  5075817 ccaattttattgtaaatggcttttgcaatggtggttttaccaatcccacccatacccca 5075875  T

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Target: chr6; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 5104924 - 5105016
Alignment:
Q  1 atttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 93  Q
    |||||| | ||||||  ||||||||||||| |||||||||||||||||||| ||||| ||||| || ||||| ||||  ||||||||||||||    
T  5104924 atttgcaaggaagcttctaccatcaaaattatggccaattttattgtaaatagctttggcaatggttgttttaccaactcctcccatacccca 5105016  T

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Target: chr6; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 5133957 - 5134049
Alignment:
Q  1 atttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 93  Q
    |||||| | ||||||| |||| ||||||| | ||||||||||||||||||||||||| ||||| || ||||| ||||  ||||||||||||||    
T  5133957 atttgcaaggaagctcctaccttcaaaatcgcggccaattttattgtaaatggctttcgcaatggttgttttaccaacgcctcccatacccca 5134049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 5445033 - 5444941
Alignment:
Q  1 atttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 93  Q
    |||||||| ||||||| | || ||||||||| ||||| | ||||||||||||||||||||||| || |||||||| ||||| ||||| |||||    
T  5445033 atttgcgaggaagctcctgccttcaaaattgcggccagtcttattgtaaatggcttttgcaattgttgtttttccgatcccccccatgcccca 5444941  T

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Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 5069123 - 5069215
Alignment:
Q  1 atttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 93  Q
    |||||| | ||||||  |||| ||||||||| ||||||||||||||||||| ||||| ||||| || ||||| ||||  ||||||||||||||    
T  5069123 atttgcaaggaagcttctaccttcaaaattgcggccaattttattgtaaatagctttggcaatggtcgttttaccaactcctcccatacccca 5069215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 5155931 - 5155843
Alignment:
Q  141 tctgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatga 229  Q
    ||||||||||||||  || |||||| ||| |||| |||||||| |||||| |||||||||||||||  ||  |||||||||||||||||    
T  5155931 tctgtcaagagattagcttctgaaggggatcccattgatgactgcaatcaaaacagaaagaagaaaggccaggtggaatgaatcaatga 5155843  T

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Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 5262195 - 5262287
Alignment:
Q  1 atttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 93  Q
    |||||| | ||||||| | |||||||||||| ||||||| ||||||||||||||||| | ||| || ||||| ||||| || |||||||||||    
T  5262195 atttgcaaggaagctccttccatcaaaattgcggccaatcttattgtaaatggctttcgtaatggttgttttgccaattccccccatacccca 5262287  T

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Target: chr6; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 5348361 - 5348269
Alignment:
Q  1 atttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 93  Q
    |||||| | ||||||  |||| ||||||||| ||||||||||||||||||| ||||| ||||| || ||||| ||||  ||||||||||||||    
T  5348361 atttgcaaggaagcttctaccttcaaaattgcggccaattttattgtaaatagctttggcaatggtcgttttaccaactcctcccatacccca 5348269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 5149039 - 5149106
Alignment:
Q  26 aaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 93  Q
    |||||| |||||||||||||||| |||||||||||||| |||| ||| ||||| || |||||||||||    
T  5149039 aaattgcggccaattttattgtagatggcttttgcaatggtggatttgccaattccccccatacccca 5149106  T

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Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 5093991 - 5093899
Alignment:
Q  1 atttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 93  Q
    |||||| | ||||||| |||| ||||||||  ||||||||| ||| || || ||||||||||| || ||||| |||||||| |||||||||||    
T  5093991 atttgcaaggaagctcctaccttcaaaattacggccaatttcattatagatagcttttgcaatggttgttttaccaatcccccccatacccca 5093899  T

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Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 5159553 - 5159645
Alignment:
Q  1 atttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 93  Q
    |||||| | ||||||| |||| ||||||||  ||||||||| ||| || || ||||||||||| || ||||| |||||||| |||||||||||    
T  5159553 atttgcaaggaagctcctaccttcaaaattacggccaatttcattatagatagcttttgcaatggttgttttgccaatcccccccatacccca 5159645  T

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Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 5356668 - 5356760
Alignment:
Q  1 atttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 93  Q
    |||||| | ||||||  |||||||||||| | ||||||||||||||||||| |||||| | || || ||||| ||||  ||||||||||||||    
T  5356668 atttgcaaggaagcttctaccatcaaaatcgcggccaattttattgtaaatagcttttccgatggttgttttgccaactcctcccatacccca 5356760  T

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Target: chr6; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 5368410 - 5368318
Alignment:
Q  1 atttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 93  Q
    |||||| | ||||||  |||| ||||||||| ||||||||||||||||||| ||||| ||||| || ||||| ||||  || |||||||||||    
T  5368410 atttgcaaggaagcttctaccttcaaaattgcggccaattttattgtaaatagctttggcaatggttgttttaccaactccccccatacccca 5368318  T

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Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 5098464 - 5098510
Alignment:
Q  92 cagtttcaatgtgaaaaagacagcagtttatctcgtatacgatgaac 138  Q
    |||||||| |||||||||||||||||||||||| ||||| |||||||    
T  5098464 cagtttcattgtgaaaaagacagcagtttatctggtatatgatgaac 5098510  T

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Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 5184004 - 5184097
Alignment:
Q  1 atttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccataccccag 94  Q
    |||||| | ||||||| |||| ||||||||| | ||||||| ||||||||||| ||| || |  || ||||| ||||| |||||||||||||||    
T  5184004 atttgcaaggaagctcctaccctcaaaattgcgaccaatttcattgtaaatggatttggctaacgttgttttaccaatacctcccataccccag 5184097  T

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Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 5242554 - 5242506
Alignment:
Q  92 cagtttcaatgtgaaaaagacagcagtttatctcgtatacgatgaacca 140  Q
    |||||||| |||||| ||||||| ||||||||||||||| |||||||||    
T  5242554 cagtttcattgtgaagaagacagtagtttatctcgtatatgatgaacca 5242506  T

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Target: chr6; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 5341644 - 5341552
Alignment:
Q  1 atttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 93  Q
    |||||| | ||| ||| |||| ||||| |||||||||| |||||| |||||||||||  |||| || || || ||||| ||||||||||||||    
T  5341644 atttgcaaggaaactcctaccttcaaagttgtggccaagtttattataaatggctttcacaatggtagtcttaccaattcctcccatacccca 5341552  T

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Target: chr6; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 5394993 - 5394901
Alignment:
Q  1 atttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 93  Q
    |||||| | ||||||| |||| ||||||||| | |||||| | ||||| |||||||| || |  |||||||| ||||| ||||||||||||||    
T  5394993 atttgcaaggaagctcctaccctcaaaattgcgaccaattctgttgtatatggctttggctaaggtggttttaccaatacctcccatacccca 5394901  T

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Target: chr6; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 5423703 - 5423611
Alignment:
Q  1 atttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 93  Q
    |||||| | ||||||  |||| ||||||||| | ||||||||||||||||| ||||| ||||| || ||||| ||||  || |||||||||||    
T  5423703 atttgcaaggaagcttctaccttcaaaattgcgaccaattttattgtaaatagctttggcaatggttgttttaccaactccccccatacccca 5423611  T

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Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 5431335 - 5431265
Alignment:
Q  23 tcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 93  Q
    ||||| ||| |||| |||| ||| ||||| |||||||||||||| |||||||| || || |||||||||||    
T  5431335 tcaaacttgcggccgatttcattataaattgcttttgcaatagttgtttttccgattccccccatacccca 5431265  T

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Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 5156052 - 5156007
Alignment:
Q  95 tttcaatgtgaaaaagacagcagtttatctcgtatacgatgaacca 140  Q
    ||||| |||||| |||||| |||||||||| |||||||||||||||    
T  5156052 tttcattgtgaagaagacaacagtttatcttgtatacgatgaacca 5156007  T

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Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 5372353 - 5372398
Alignment:
Q  95 tttcaatgtgaaaaagacagcagtttatctcgtatacgatgaacca 140  Q
    ||||| |||||| |||||| || |||||||||||||||||||||||    
T  5372353 tttcattgtgaagaagacaacaatttatctcgtatacgatgaacca 5372398  T

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Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 25567922 - 25567861
Alignment:
Q  32 tggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 93  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  25567922 tggccaattttattgtaaatggcttttgcaatggtggttttgccaatccctcccatacccca 25567861  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 4126499 - 4126581
Alignment:
Q  11 aagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 93  Q
    |||||| |||| ||||||||  ||||||||||||||||||||||||||||||| |||||||| ||||| || ||||| |||||    
T  4126499 aagctcctaccttcaaaattccggccaattttattgtaaatggcttttgcaatggtggttttaccaattccacccatccccca 4126581  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 4323164 - 4323246
Alignment:
Q  11 aagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 93  Q
    |||||| |||| ||||||||| | |||||||||||||||||||| |||||||  |||||||||||||| || ||||| |||||    
T  4323164 aagctcctaccttcaaaattgcgaccaattttattgtaaatggcctttgcaacggtggtttttccaattccacccatccccca 4323246  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 4358350 - 4358268
Alignment:
Q  11 aagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 93  Q
    |||||| |||| ||||||||| | ||||||||||||||||||| ||||||||| ||||||||||| || || ||||| |||||    
T  4358350 aagctcctaccttcaaaattgcgaccaattttattgtaaatggattttgcaatggtggtttttccgattccacccatccccca 4358268  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 4333492 - 4333410
Alignment:
Q  11 aagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 93  Q
    |||||| |||| | ||| ||| |||||||||||||||||||||| || ||||| |||||||| |||||||| ||||| |||||    
T  4333492 aagctcctaccttgaaatttgcggccaattttattgtaaatggccttcgcaattgtggttttcccaatcccacccatccccca 4333410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 4342870 - 4342800
Alignment:
Q  23 tcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 93  Q
    ||||||||| | ||||||||||||||||||||||||||||| |||||||| || || || ||||| |||||    
T  4342870 tcaaaattgcgaccaattttattgtaaatggcttttgcaatggtggttttccccattccacccatccccca 4342800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 4351164 - 4351120
Alignment:
Q  18 taccatcaaaattgtggccaattttattgtaaatggcttttgcaa 62  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||    
T  4351164 taccttcaaaattgcggccaattttattgtaaatggcttttgcaa 4351120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 4330429 - 4330368
Alignment:
Q  11 aagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttt 72  Q
    |||||| |||| ||||||||| ||||||||||||| |||||||| |||||||| ||| ||||    
T  4330429 aagctcctaccttcaaaattgcggccaattttattataaatggcctttgcaatggtgatttt 4330368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 7888807 - 7888890
Alignment:
Q  10 gaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 93  Q
    |||||||||  |||||||||  || | |||||||||||||| |||||| ||||  || ||||| |||||||||||||| |||||    
T  7888807 gaagctctttgcatcaaaatcatgacgaattttattgtaaacggctttagcaagggttgttttcccaatccctcccatgcccca 7888890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 4135630 - 4135688
Alignment:
Q  35 ccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 93  Q
    |||| ||||||||||| || |||||||||||| ||||| ||||| ||| ||||||||||    
T  4135630 ccaactttattgtaaacggattttgcaatagttgttttaccaataccttccatacccca 4135688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 25569096 - 25569142
Alignment:
Q  92 cagtttcaatgtgaaaaagacagcagtttatctcgtatacgatgaac 138  Q
    ||||||||| ||||| || ||| ||||||||||||||||||||||||    
T  25569096 cagtttcaaagtgaagaatacaacagtttatctcgtatacgatgaac 25569142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 4132660 - 4132612
Alignment:
Q  92 cagtttcaatgtgaaaaagacagcagtttatctcgtatacgatgaacca 140  Q
    |||||||| |||||  |||||||||||||||||| |||| |||||||||    
T  4132660 cagtttcattgtgatgaagacagcagtttatctcatatatgatgaacca 4132612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 4319344 - 4319296
Alignment:
Q  92 cagtttcaatgtgaaaaagacagcagtttatctcgtatacgatgaacca 140  Q
    |||||||| |||||  |||||||||||||||||| |||| |||||||||    
T  4319344 cagtttcattgtgatgaagacagcagtttatctcatatatgatgaacca 4319296  T

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Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 47985298 - 47985223
Alignment:
Q  154 tctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatga 229  Q
    ||||||||||||||||| |||  ||||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  47985298 tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaatcaatga 47985223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 47994585 - 47994510
Alignment:
Q  154 tctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatga 229  Q
    ||||||||||||||||| |||  ||||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  47994585 tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaatcaatga 47994510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 48003872 - 48003797
Alignment:
Q  154 tctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatga 229  Q
    ||||||||||||||||| |||  ||||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  48003872 tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaatcaatga 48003797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 48013157 - 48013082
Alignment:
Q  154 tctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatga 229  Q
    ||||||||||||||||| |||  ||||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  48013157 tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaatcaatga 48013082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1476 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 163 - 228
Alignment:
Q  199 agaagaaaaaccgagtggaatgaatcaatgaaagatagtaaagcgatggccgagcaaaaatcaatt 264  Q
    |||||||||| |||||||| |||||||||||||||| ||||| | ||||| |||||||||||||||    
T  163 agaagaaaaaacgagtggagtgaatcaatgaaagatggtaaaacaatggcggagcaaaaatcaatt 228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 264
Target Start/End: Complemental strand, 22583280 - 22583209
Alignment:
Q  195 agaaagaagaaaaaccgagtggaatgaatcaatgaaagatagtaaagcgatggc--cgagcaaaaatcaatt 264  Q
    |||||||||||||| |||||||| |||||||||||||||| ||||| | |||||   |||||||||||||||    
T  22583280 agaaagaagaaaaatcgagtggagtgaatcaatgaaagatggtaaaacaatggcggagagcaaaaatcaatt 22583209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 22586367 - 22586459
Alignment:
Q  1 atttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttttccaatccctcccatacccca 93  Q
    |||||| | ||||||| |||| ||||| | | ||||||| ||||||||||  ||||||||||| || ||||| ||||  || |||||||||||    
T  22586367 atttgcaaggaagctcctaccttcaaactcgcggccaatcttattgtaaacagcttttgcaatggttgttttgccaaatccccccatacccca 22586459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 7793 - 7741
Alignment:
Q  143 tgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaaca 195  Q
    |||||||||  ||| |||| |||||||||||||||| | ||||||||||||||    
T  7793 tgtcaagagtatctgtactcaagaggagcccactgaaggcttcaatcagaaca 7741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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