View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6118_low_2 (Length: 532)
Name: NF6118_low_2
Description: NF6118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6118_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 21 - 526
Target Start/End: Original strand, 24399010 - 24399499
Alignment:
| Q |
21 |
aagaaaatatgtatatgtgaagcaactaataacgaaataatttactttgatataggctccactacctgcaatagcattgctttcaagtgcagaaattgtt |
120 |
Q |
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| T |
24399010 |
aagaaaatatgtacatgtgaagcaactaataacgaaataatttactttgatataggctccactgcctgcaatagcattgctttcaagtgcagaaattgtt |
24399109 |
T |
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| Q |
121 |
catgagcctttgggtctcgtcctcattatttcatcttggaatttgccctttggtgagttagttatatactacaatacttcttgctttgaaccaaaatcac |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24399110 |
catgagcctttgggtctcgtcctcattatttcatcttggaatttgccctttggtgagttagttatatactacaatacttcttgctttgaaccaaaatcac |
24399209 |
T |
|
| Q |
221 |
agtcattcaattactagataaagttgaaacaacgacaaaaatttagagacggaaaattggaaatctgattctaattccgtagttaagtgttagagatgca |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24399210 |
agtcattcaattactagataaagttgaaacaacgacaaaaatttagagacggaaaattggaaatctgattctaatttcgtagttaagtgttagagatgcg |
24399309 |
T |
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| Q |
321 |
aaatttaccgaccaactttaannnnnnnngcgtataannnnnnncgttattttgttagagtcttcatagatttgagctcgtaatataatattttgtaacc |
420 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24399310 |
aaatttaccgaccaacttta----------------atttttttcgttattttgttagagtcttcatagatttgagctcgtaacataatattttgtaacc |
24399393 |
T |
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| Q |
421 |
tatnnnnnnncacaggagtgtctttggagccactgataggagctatagctgctggaaatgcagcagtgttaaaaccttcagagttgtctcctgcatgttc |
520 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24399394 |
tataaaaaaacacaggagtgtctttggagccactgataggagctatagctgctggaaatgcagcagtgttaaaaccttcagagttgtctcctgcatgttc |
24399493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 41842931 - 41843019
Alignment:
| Q |
90 |
aatagcattgctttcaagtgcagaaattgttcatgagcctttgggtctcgtcctcattatttcatcttggaatttgccctttggtgagt |
178 |
Q |
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||||||| | ||||||||||||||||||||| ||||||| | ||||| |||||||| || ||||| |||||||| ||||||||||||| |
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| T |
41842931 |
aatagcactactttcaagtgcagaaattgttgctgagcctcttggtctagtcctcataatctcatcatggaattttccctttggtgagt |
41843019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 506
Target Start/End: Original strand, 41843117 - 41843191
Alignment:
| Q |
432 |
acaggagtgtctttggagccactgataggagctatagctgctggaaatgcagcagtgttaaaaccttcagagttg |
506 |
Q |
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|||||| |||| ||||||||| | || ||||| |||||||||||||||| ||||| ||||||||||||||||| |
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| T |
41843117 |
acaggactgtccttggagccattaattggagccatagctgctggaaatgttgcagtcctaaaaccttcagagttg |
41843191 |
T |
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