View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6118_low_20 (Length: 253)
Name: NF6118_low_20
Description: NF6118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6118_low_20 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 5100583 - 5100337
Alignment:
| Q |
1 |
ttgtattctcaaagagttctgaaatattctaatttgttctgttacaattcttccatgtcatataccatttaaatgtcttttaacaaaatggactcaaata |
100 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5100583 |
ttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatataccatttaaatgtcttttaacaaaatggactcaaata |
5100484 |
T |
|
| Q |
101 |
g-tatagcatttaaatgtttagcaaaacttctgtagtcctaaataataggatatatagctgccaagaataaactctgatttgaacaatgagcatttttac |
199 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
5100483 |
gttatagcatttaaatgtttagc-aaacttctgtagtcctaaataataggatatatagctgccaagaagaaactctgatttgaacaatgagca-ttttac |
5100386 |
T |
|
| Q |
200 |
ctcagcatcagattttatagttatatggctcaagctcgtttcctttgct |
248 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5100385 |
ctcagcatcaggttttatagttatatggctcaagctcatttcctttgct |
5100337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 5135684 - 5135559
Alignment:
| Q |
1 |
ttgtattctcaaagagttctgaaatattctaatttgttctgttacaattcttccatgtcatataccatttaaatgtcttttaacaaaatggactcaaata |
100 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5135684 |
ttgtattcaaaaagagttctgaaagattctaatttgttctgttacaattcttccatgttatataccatttaaatgtcttttaacaaaatggactcaaata |
5135585 |
T |
|
| Q |
101 |
g-tatagcatttaaatgtttagcaaa |
125 |
Q |
| |
|
| |||||||||||||||||||||||| |
|
|
| T |
5135584 |
gttatagcatttaaatgtttagcaaa |
5135559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 181
Target Start/End: Original strand, 5351889 - 5352065
Alignment:
| Q |
4 |
tattctcaaagagttctgaaatattctaatttgttctgttacaattcttccatgtcatataccatttaaatgtcttttaacaaaatggactcaaatag-t |
102 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||||||||| || |||| | |
|
|
| T |
5351889 |
tattcacaaagagtggtgaaagattctaatttgttctgttacaattgttccatgtcatgtactatttaaaagtcttttaacaaaatgggct-ttatagtt |
5351987 |
T |
|
| Q |
103 |
atagcatttaaatgtttagcaaaacttctgtagtcctaaataataggatatatagctgccaagaataaactctgatttg |
181 |
Q |
| |
|
| |||||||||||||| || ||| |||||||| || | ||| |||| |||||| |||||||||| ||||||||||||| |
|
|
| T |
5351988 |
acagcatttaaatgttaag-aaagcttctgtactcatgaatgatagcatatatgactgccaagaagaaactctgatttg |
5352065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 5398563 - 5398660
Alignment:
| Q |
20 |
tgaaatattctaatttgttctgttacaattcttccatgtcatataccatttaaatgtcttttaacaaaatggactcaaatag-tatagcatttaaatgt |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||| |||||||||| ||||| |||||||||| ||||| |
|
|
| T |
5398563 |
tgaaagattctaatttgttctgttacaattcttccatgtcatgtactatttaaaagtcttttaactaaatggactc-aatagttatagcatttcaatgt |
5398660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 5242190 - 5242120
Alignment:
| Q |
27 |
ttctaatttgttctgttacaattcttccatgtcatataccatttaaatgtcttttaacaaaatggactcaa |
97 |
Q |
| |
|
|||||||||||| ||||| ||||||| |||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5242190 |
ttctaatttgttatgttataattctttcatgtcatgtaccatttaaatgtcttttaacaaaatgggctcaa |
5242120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 250
Target Start/End: Original strand, 2939463 - 2939549
Alignment:
| Q |
163 |
aagaataaactctgatttgaacaatgagcatttttacctcagcatcagattttatagttatatggctcaagctcgtttcctttgctac |
250 |
Q |
| |
|
||||| |||||||||||||| || |||||||||| |||||||||||||| | |||||||| | |||||||||| ||||| ||||||| |
|
|
| T |
2939463 |
aagaagaaactctgatttgagcagtgagcatttt-acctcagcatcagactccatagttatcttgctcaagctcatttccattgctac |
2939549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 125
Target Start/End: Complemental strand, 5155755 - 5155662
Alignment:
| Q |
33 |
tttgttctgttacaattcttccatgtcatataccatttaaatgtc-ttttaacaaaatggactcaaatag-tatagcatttaaatgtttagcaaa |
125 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||| || ||||||| ||||||||| ||||| ||||| || ||||||||||||||| |
|
|
| T |
5155755 |
tttgttctgttacaattcgtccatgtcacgtaccatttaaatatctttttaaccaaatggact-gaatagctatagtatctaaatgtttagcaaa |
5155662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 2939370 - 2939419
Alignment:
| Q |
32 |
atttgttctgttacaattcttccatgtcatataccatttaaatgtctttt |
81 |
Q |
| |
|
|||||||||||||| |||| |||||||||| |||||||||||| |||||| |
|
|
| T |
2939370 |
atttgttctgttacgattcatccatgtcatgtaccatttaaatatctttt |
2939419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 5098677 - 5098721
Alignment:
| Q |
20 |
tgaaatattctaatttgttctgttacaattcttccatgtcatata |
64 |
Q |
| |
|
|||| |||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5098677 |
tgaactattgtaagttgttctgttacaattcttccatgtcatata |
5098721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 5155663 - 5155594
Alignment:
| Q |
163 |
aagaataaactctgatttgaacaatgagcatttttacctcagcatcagattttatagttatatggctcaag |
233 |
Q |
| |
|
||||| ||| |||||||||| ||||||||| |||||||||||||||||| | |||||||| | ||||||| |
|
|
| T |
5155663 |
aagaagaaaatctgatttgagcaatgagca-ttttacctcagcatcagactccatagttatcttgctcaag |
5155594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 23127149 - 23127112
Alignment:
| Q |
20 |
tgaaatattctaatttgttctgttacaattcttccatg |
57 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23127149 |
tgaaatatcataatttgttctgttacaattcttccatg |
23127112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 5427325 - 5427369
Alignment:
| Q |
136 |
tcctaaataataggatatatagctgccaagaataaactctgattt |
180 |
Q |
| |
|
|||| ||| ||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
5427325 |
tcctgaatgataggatatatggctgccaagaagaaactctgattt |
5427369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University