View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6118_low_22 (Length: 250)
Name: NF6118_low_22
Description: NF6118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6118_low_22 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 37896268 - 37896030
Alignment:
| Q |
13 |
aatattaactgatttgaactaagccatcaaaattgaacaagcccaatttattaatttagatttggaatgcaaaagaaaaatgaagcataaaatttaacaa |
112 |
Q |
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| T |
37896268 |
aatattaactgatttgaactaagccatcaaaattgaacaagcccaatttattaatttagatttggaatgcaaaagaaaaatgaagcataaaatttaacaa |
37896169 |
T |
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| Q |
113 |
tagtggcatggatattgctggcaaaatgcaa-tgaaagttcaaatgtagatatgttgactatcagattataaagttttccaaatataagttattactaca |
211 |
Q |
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| T |
37896168 |
tagtggcatggatattgctcgcaaaatgcaattgaaagttcaaatgtagatatgttgctcatcagattataaagttttccaaatataagttatttctaca |
37896069 |
T |
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| Q |
212 |
taaaactaaggactcaaatgatcactcttttcattgata |
250 |
Q |
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| T |
37896068 |
taaaactaaggactcaaatgatcactcttttcattgata |
37896030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 37898507 - 37898445
Alignment:
| Q |
24 |
atttgaactaagccatcaaaattgaacaagcccaatttattaatttagatttggaatgcaaaa |
86 |
Q |
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| T |
37898507 |
atttgaactaagccatcaatcttgaacaaacccaatttattaatttggatttgaaatgcaaaa |
37898445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 9581237 - 9581312
Alignment:
| Q |
16 |
attaactgatttgaactaagccatcaaaattgaacaagcccaatttattaatttagatttggaatgcaaaagaaaaa |
92 |
Q |
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| T |
9581237 |
attaattgatttgaactaagccaccaagcttgaacaagccaagtttatt-atttaggtttgggatacaaaagaaaaa |
9581312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 9586932 - 9587007
Alignment:
| Q |
16 |
attaactgatttgaactaagccatcaaaattgaacaagcccaatttattaatttagatttggaatgcaaaagaaaaa |
92 |
Q |
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| T |
9586932 |
attaattgatttgaactaagccaccaagcttgaacaagccaagtttatt-atttaggtttgggatacaaaagaaaaa |
9587007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 29300615 - 29300570
Alignment:
| Q |
175 |
agattataaagttttccaaatataagttattactacataaaactaa |
220 |
Q |
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| T |
29300615 |
agattataaagttttccatatataagttattactacatagaactaa |
29300570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 33869801 - 33869754
Alignment:
| Q |
172 |
atcagattataaagttttccaaatataagttattactacataaaacta |
219 |
Q |
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| T |
33869801 |
atcagattataaagttttccgtatataagttatttctacataaaacta |
33869754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 34278032 - 34278073
Alignment:
| Q |
179 |
tataaagttttccaaatataagttattactacataaaactaa |
220 |
Q |
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| T |
34278032 |
tataaagttttccatatataagttatttctacataaaactaa |
34278073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 25526435 - 25526482
Alignment:
| Q |
172 |
atcagattataaagttttccaaatataagttattactacataaaacta |
219 |
Q |
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| T |
25526435 |
atcagattataaagttttccatatataagttgtttctacttaaaacta |
25526482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 42447095 - 42447020
Alignment:
| Q |
13 |
aatattaactgatttgaactaagccatcaaaattgaacaagcccaatttattaatttagatttggaatgcaaaaga |
88 |
Q |
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|||||||| |||||||||||||| |||||| ||||||||| || ||||||||||| ||||| | |||||||||| |
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| T |
42447095 |
aatattaattgatttgaactaagtcatcaagcttgaacaagatcagtttattaatttggattttggatgcaaaaga |
42447020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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