View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6118_low_24 (Length: 245)
Name: NF6118_low_24
Description: NF6118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6118_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 13047983 - 13047874
Alignment:
| Q |
17 |
aaaatcccaaagcttctcaaaaaccaaagaaactcaccaatgggtaaaattcactctctttattactttatgcctcttccttctttacttcatgtacccc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13047983 |
aaaatcccaaagcttctcaaaaaccaaagaaactcaccaatgggtaaaattcactctctttattactttatgcctcttccttctttacttcatgtacccc |
13047884 |
T |
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| Q |
117 |
aaaaccataa |
126 |
Q |
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| ||| |||| |
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| T |
13047883 |
acaacaataa |
13047874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 13052980 - 13052871
Alignment:
| Q |
17 |
aaaatcccaaagcttctcaaaaaccaaagaaactcaccaatgggtaaaattcactctctttattactttatgcctcttccttctttacttcatgtacccc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13052980 |
aaaatcccaaagcttctcaaaaaccaaagaaactcaccaatgggtaaaattcactctctttattactttatgcctcttccttctttacttcatgtacccc |
13052881 |
T |
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| Q |
117 |
aaaaccataa |
126 |
Q |
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| ||| |||| |
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| T |
13052880 |
acaacaataa |
13052871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 13043065 - 13042989
Alignment:
| Q |
50 |
tcaccaatgggtaaaattcactctctttattactttatgcctcttccttctttacttcatgtaccccaaaaccataa |
126 |
Q |
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| T |
13043065 |
tcaccaatgggtaaagttcactctctttattactttatgcctcttccttctttacttcatgtaccccacaaccataa |
13042989 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 13042942 - 13042888
Alignment:
| Q |
173 |
atgcgatggatcaactccatcattctacatttacaatctccctccacgtttcaac |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13042942 |
atgcgatggatcaactccatcattctacatttacaatctccctccacgtttcaac |
13042888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 13047833 - 13047779
Alignment:
| Q |
173 |
atgcgatggatcaactccatcattctacatttacaatctccctccacgtttcaac |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13047833 |
atgcgatggatcaactccatcattctacatttacaatctccctccacgtttcaac |
13047779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 13052830 - 13052776
Alignment:
| Q |
173 |
atgcgatggatcaactccatcattctacatttacaatctccctccacgtttcaac |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13052830 |
atgcgatggatcaactccatcattctacatttacaatctccctccacgtttcaac |
13052776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 13043113 - 13043077
Alignment:
| Q |
17 |
aaaatcccaaagcttctcaaaaaccaaagaaactcac |
53 |
Q |
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|||||||||||||||||||||| |||||||||||||| |
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| T |
13043113 |
aaaatcccaaagcttctcaaaatccaaagaaactcac |
13043077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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