View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6118_low_25 (Length: 243)
Name: NF6118_low_25
Description: NF6118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6118_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 5774533 - 5774304
Alignment:
| Q |
1 |
atcagctgctgactgacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttatnnnnnnnnnttgtggaaattttgtgt |
100 |
Q |
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| T |
5774533 |
atcagctgctgactgacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttataaaaaggaattgtggaaattttgtgt |
5774434 |
T |
|
| Q |
101 |
tatttagaatgtaactaatcgaatgagtaaagttatatatataatagtatttcacctaggcatttgaaaaatttctgcacacgcacatgtgcttcatctc |
200 |
Q |
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| T |
5774433 |
tatttagaatgtaactaatcgaatgagtaaagttatata----atagtatttcacctaggcatttgaaaaatttctgcacacacacatgtgcttcatctc |
5774338 |
T |
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| Q |
201 |
tgatttttcacctttcttctttccatgatgatgt |
234 |
Q |
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| T |
5774337 |
tgatttttaacctttcttctttccatgatgatgt |
5774304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 5768262 - 5768189
Alignment:
| Q |
1 |
atcagctgctgactgacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttat |
74 |
Q |
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||||| ||||||| |||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| |
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| T |
5768262 |
atcaggtgctgaccgacaatgagaagaaaaccttactcgagagatacaccgttaaagaaactcaggtcagttat |
5768189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 465750 - 465800
Alignment:
| Q |
21 |
gagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagt |
71 |
Q |
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| T |
465750 |
gagaagaaaaccttgcttgagagatacactgtcaaggaaactcaggtcagt |
465800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 129
Target Start/End: Complemental strand, 5768171 - 5768137
Alignment:
| Q |
95 |
ttgtgttatttagaatgtaactaatcgaatgagta |
129 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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| T |
5768171 |
ttgtgttatttagaatgtgactaatcgaatgagta |
5768137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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