View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6118_low_26 (Length: 238)
Name: NF6118_low_26
Description: NF6118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6118_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 52056585 - 52056805
Alignment:
| Q |
1 |
gtcacattagactttacatcgacaccacaattttagtcctgtaattaagggatttattgactttcctcacaatgtaaaattaaactcctaattaaaattt |
100 |
Q |
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| T |
52056585 |
gtcacattagactttacatcgacaccacaattttagtcctgtaattaagtgatttattgactttcctcacaatgtaaaattaaactcctaattaaaattt |
52056684 |
T |
|
| Q |
101 |
gtcannnnnnnnnnnnacacaagtcgtacataaaatagagataaagtttaaaacaagtttataaagaatgacaattatcaccatataagttggtgttaca |
200 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
52056685 |
gtcattttttatttttacacaagttgtacataaaatagagataaagtttaaaacaagtttataaagaatgacaattatcaccttataagttggtgttaca |
52056784 |
T |
|
| Q |
201 |
aggatgaattaaatcaagtat |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
52056785 |
aggatgaattaaatcaagtat |
52056805 |
T |
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