View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6118_low_27 (Length: 236)
Name: NF6118_low_27
Description: NF6118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6118_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 9696861 - 9697082
Alignment:
| Q |
1 |
agtttctttgctacaatatagtaccaattgctctgtacaagtgatacacaaattagcaactacacatagcagagccacaacaaattcacatgtggtttga |
100 |
Q |
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| T |
9696861 |
agtttctttgctacaatatagtaccaattgctctgtacaagtgatacacaaattagcaactacacatagcagagccacaacaaattcacatgtggtttga |
9696960 |
T |
|
| Q |
101 |
ggctaatatttaagtttctgctccaaagttgggtctagcagtgtggattgctccttagatctcagcataaaagtgtgaaagcatcctaagaggcttggag |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9696961 |
ggctaatgtttaagtttctgctccaaagttgggtctagcagtgtggattgctccttagttctcagcataaaagtgtgaaagcatcctaagaggcttggag |
9697060 |
T |
|
| Q |
201 |
aattcttcaaatgttaagtttg |
222 |
Q |
| |
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||||||||||| |||||||||| |
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| T |
9697061 |
aattcttcaaaggttaagtttg |
9697082 |
T |
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