View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6118_low_30 (Length: 227)
Name: NF6118_low_30
Description: NF6118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6118_low_30 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 3562494 - 3562302
Alignment:
| Q |
20 |
gtaacgcacatatacagagaagggaatcaatgtgccgatagcttgacagcatggggactgaatgctaattgtttaactgtgtgaacagatgtacccttgt |
119 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3562494 |
gtaacacacatatacagagaagggaatcaatgtgccgatagcttggcagcatggggactgaatgctaattgtttaactgtgtggacagatgtacccttgt |
3562395 |
T |
|
| Q |
120 |
ttatcatagaatattatgttaagaatagacttggtatgcctaattttaggtttatcaacttctaggaggttaggtttatgtccccctcctttg |
212 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3562394 |
ttatcagagaatattatgttaagaatagacttggtatgcctaattttaggtttatcaacttctaggaggttaggtttatgtccccctcctttg |
3562302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 9748944 - 9748894
Alignment:
| Q |
127 |
agaatattatgttaagaatagacttggtatgcctaattttaggtttatcaa |
177 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
9748944 |
agaatattatgttaagaatagactaggtatgcctaactttaggtttatcaa |
9748894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 34066119 - 34066064
Alignment:
| Q |
135 |
atgttaagaatagacttggtatgcctaattttaggtttatcaacttctaggaggtt |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||| |||||||||||| |
|
|
| T |
34066119 |
atgttaagaatagacttggtatgcctaattataggtttagcaatttctaggaggtt |
34066064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 211
Target Start/End: Original strand, 22934420 - 22934512
Alignment:
| Q |
121 |
tatcatagaatattatgttaagaatagacttggtatgcctaattttaggtttatcaacttctaggagg-ttaggt-ttatgtccccctccttt |
211 |
Q |
| |
|
||||| ||||| |||||| || ||| | ||||||||||||||||||||||||||||| || ||||||| || ||| ||||||||||||||||| |
|
|
| T |
22934420 |
tatcagagaattttatgtcaaaaatcgtcttggtatgcctaattttaggtttatcaatttttaggaggttttggtcttatgtccccctccttt |
22934512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 21025757 - 21025700
Alignment:
| Q |
156 |
tgcctaattttaggtttatcaacttctaggagg-ttaggt-ttatgtccccctccttt |
211 |
Q |
| |
|
|||||||||||||||||||||| || ||||||| || ||| ||||||||||||||||| |
|
|
| T |
21025757 |
tgcctaattttaggtttatcaatttttaggaggttttggtcttatgtccccctccttt |
21025700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 211
Target Start/End: Original strand, 23352368 - 23352460
Alignment:
| Q |
121 |
tatcatagaatattatgttaagaatagacttggtatgcctaattttaggtttatcaacttctaggagg-ttaggt-ttatgtccccctccttt |
211 |
Q |
| |
|
||||| ||||| |||||| || ||| | ||||||||||||||||||||||||||||| || ||||||| || ||| ||||||||||||||||| |
|
|
| T |
23352368 |
tatcagagaattttatgtcaaaaatcgtcttggtatgcctaattttaggtttatcaatttttaggaggttttggtcttatgtccccctccttt |
23352460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 30039661 - 30039593
Alignment:
| Q |
144 |
atagacttggtatgcctaattttaggtttatcaacttctaggagg-ttaggtttatgtccccctccttt |
211 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| || || ||| | |||||||||||||| |
|
|
| T |
30039661 |
atagacttggtatgcctaactttaggtttatcaacttctaggtggttttggtatctgtccccctccttt |
30039593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 17704529 - 17704580
Alignment:
| Q |
139 |
taagaatagacttggtatgcctaattttaggtttatcaacttctaggaggtt |
190 |
Q |
| |
|
|||||||||| || | ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
17704529 |
taagaatagaattagcatgcctaattttaggtttatcaacttcgaggaggtt |
17704580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 7728181 - 7728120
Alignment:
| Q |
127 |
agaatattatgttaagaatagacttggtatgcctaattttaggtttatcaacttctaggaggtt |
190 |
Q |
| |
|
|||||| ||||| |||||||||||||| ||||||| | |||||||||||| | |||||||||| |
|
|
| T |
7728181 |
agaatactatgtaaagaatagacttgg--tgcctaactataggtttatcaattcctaggaggtt |
7728120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University