View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6118_low_32 (Length: 221)
Name: NF6118_low_32
Description: NF6118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6118_low_32 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 4064225 - 4064036
Alignment:
| Q |
17 |
atgaatgagctatatagctttagtctccatatctttttattcgtactcagcttctgataaaatgcatttttctgcttgtagttgcaacaaaagttgtgtt |
116 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4064225 |
atgaatgagctacatagctttagtctccatatctttttattcgtactcagcttctgataaaatgcatttttctgcttgtagttgcaacaaaagttgtgtt |
4064126 |
T |
|
| Q |
117 |
cctttgtcgagcaataaataaattgtctgcgaggctaacgaggagatcatcagagtccacacaaccacaacagtcatcctcatcatctgt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4064125 |
cctttgtcgagcaataaataaattgtctgcgaggctaacgaggagatcatcagagtccacacaaccacaacagtcatcctcatcatctgt |
4064036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 4057926 - 4057882
Alignment:
| Q |
82 |
atttttctgcttgtagttgcaacaaaagttgtgttcctttgtcga |
126 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
4057926 |
atttttctgcttgtagatgcaaacaaagttgtgttccttcgtcga |
4057882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University