View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6118_low_33 (Length: 203)
Name: NF6118_low_33
Description: NF6118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6118_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 28594037 - 28594213
Alignment:
| Q |
13 |
agatgaagagagtcttttggtgttgattgtcttcccaaattgcccttgtgctttgttgcatatttcaatataagactttgttctaaatgtttccagatat |
112 |
Q |
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| T |
28594037 |
agatgaagagagtcttttggtgttgattgtcttcccaaattgcccttgtgctttgttgcatatttcaatataagactttgttctaaatgtttccagatat |
28594136 |
T |
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| Q |
113 |
tcttcatttacgtttggcttcttacacaagctttcttccttatcacgttgtttccgtgatctacctgcataataaat |
189 |
Q |
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| T |
28594137 |
tcttcatttacgtttggcttcttacacaagctttcttccttatcaagttgtttccgtgatctacctgcataataaat |
28594213 |
T |
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Target: chr1 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 8357548 - 8357382
Alignment:
| Q |
19 |
agagagtcttttggtgttgattgtcttcccaaattgcccttgtgctttgttgcatatttcaatataagactttgttctaaatgtttccagatattcttca |
118 |
Q |
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|||||||||||||||| ||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||| |
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| T |
8357548 |
agagagtcttttggtgctgattgtcttctcaaattgcacttttgctttgttgcatatttcaatataagactttgttctaaatgcttcaaaatattcttca |
8357449 |
T |
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| Q |
119 |
tttacgtttggcttcttacacaagctttcttccttatcacgttgtttccgtgatctacctgcataat |
185 |
Q |
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| T |
8357448 |
tttacatttgacttcctacacaagctatcatccttatgacattgtttccgtgatctacctgcttaat |
8357382 |
T |
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