View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6118_low_4 (Length: 502)
Name: NF6118_low_4
Description: NF6118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6118_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 87 - 490
Target Start/End: Complemental strand, 35189563 - 35189165
Alignment:
| Q |
87 |
ttaccagcaacatcttggccatcatagaaaccacggtgaacagtaccgaaagtgccacgagctaagacactcttgatgatgaggttagaaggatcaattt |
186 |
Q |
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| T |
35189563 |
ttaccagcaacatcttggccatcatagaaaccacggtgaacagtaccgaaagtgccacgagctaagacactcttgatgatgaggttagaaggatcaattt |
35189464 |
T |
|
| Q |
187 |
cccactcttctctttgctccatgttattaccaccagtagtagcaatagagtttgagtgatcatgagaagaatcatcatttaccttgttgaagtgtttctc |
286 |
Q |
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| T |
35189463 |
cccactcttctctttgctccatgttattaccaccagtagtagcaatagagtttgagtgatcatgagaagaatcatcatttaccttgttgaagtgtttctc |
35189364 |
T |
|
| Q |
287 |
aagttgttcatcaatggtttttagatcaatttgatcagctctcacaaacccatcattcatttttccacaccctatcttctgaggatgtgattgattattg |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35189363 |
aagttgttcatcaatggtttttagatcaatttgatcagctctcacaaacccatcattcatttttccacaccctatcttctgagaatgtgattgattattg |
35189264 |
T |
|
| Q |
387 |
gtgcagcataaatagaatagaatagaatagaggggacattgattgtggtaaaatgtagtattatggtggatagagagagtgtttgagttgtcgtttgatg |
486 |
Q |
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| T |
35189263 |
gtgcagcataaatagaatagaa-----tagaggggacattgattgtggtaaaatgtagtattatggtggatagagagagtgtttgagttgtcgtttgatg |
35189169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 89 - 190
Target Start/End: Complemental strand, 43970925 - 43970824
Alignment:
| Q |
89 |
accagcaacatcttggccatcatagaaaccacggtgaacagtaccgaaagtgccacgagctaagacactcttgatgatgaggttagaaggatcaatttcc |
188 |
Q |
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| T |
43970925 |
accagcaacatcttgagtatcataaacaccacgatgaacagtgccaaaagtgccacgagcaataacacttttgatgatgagtttagaaggatcaatttcc |
43970826 |
T |
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| Q |
189 |
ca |
190 |
Q |
| |
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|| |
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| T |
43970825 |
ca |
43970824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 341
Target Start/End: Complemental strand, 43970669 - 43970595
Alignment:
| Q |
267 |
accttgttgaagtgtttctcaagttgttcatcaatggtttttagatcaatttgatcagctctcacaaacccatca |
341 |
Q |
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| T |
43970669 |
accttgttgagatgtctttcaagctgttcatcgatgcttttcagatcaatctgatctgctcttacaaacccatca |
43970595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 88 - 195
Target Start/End: Complemental strand, 1663862 - 1663755
Alignment:
| Q |
88 |
taccagcaacatcttggccatcatagaaaccacggtgaacagtaccgaaagtgccacgagctaagacactcttgatgatgaggttagaaggatcaatttc |
187 |
Q |
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|||||||||||||| ||||||||| | |||||| ||||||||||| ||||| |||||||| | |||| | ||||| || || |||||||||||||| || |
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| T |
1663862 |
taccagcaacatctatgccatcataaacaccacgatgaacagtaccaaaagtaccacgagcaatgacagttttgataataagtttagaaggatcaatctc |
1663763 |
T |
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| Q |
188 |
ccactctt |
195 |
Q |
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||| |||| |
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| T |
1663762 |
ccattctt |
1663755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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