View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6118_low_5 (Length: 466)
Name: NF6118_low_5
Description: NF6118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6118_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 29676425 - 29676149
Alignment:
| Q |
1 |
cacagtgccttagtttcttcatcttttctagaacaagaattcaagaaaagaaaatgagcaattataaaggcaaagggaaaaactattaagaattttgaag |
100 |
Q |
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| T |
29676425 |
cacagtgccttagtttcttcatcttttctagaacaagaattcaagaaaagaaaatgagcaattataaaggcaaagggaaaaactattaagaattttgaag |
29676326 |
T |
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| Q |
101 |
tttcataattacctcgctggtcttcgaagaatggagtgaaattcagcaagaactctcagaaaatggattgaaatgattttcagggaaaacgaatttgatg |
200 |
Q |
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| T |
29676325 |
tttcataattacctcgctggtcttcgaagaatggagtgaaattcagcaagaactctcagaaaatggattgaaatgattttcagggaaaacgaatttgatg |
29676226 |
T |
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| Q |
201 |
agcgaatagtttctttttagcaagacgagggagggaataaattggtgccaactgtgttttcaagggagggagtatgc |
277 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29676225 |
agcgaacagtttctttttagcaagacgagggagggaataaattggtgccaactgtgttttcaagggagggagtatgc |
29676149 |
T |
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