View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6118_low_7 (Length: 403)
Name: NF6118_low_7
Description: NF6118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6118_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 194 - 384
Target Start/End: Complemental strand, 6885086 - 6884896
Alignment:
| Q |
194 |
acaaaacttttgtattaaaattgttatatctggttaataattttgtattgttattcccaccaaagtttttcgattttggttaataatttttgttctcatg |
293 |
Q |
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| T |
6885086 |
acaaaacttttgtattaaaattgttatatctggttaataattttgtattgttattcccaccaaagtttttcgattttcgttaataatttttgttctcatg |
6884987 |
T |
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| Q |
294 |
tgttgttacagaaattgttatatctggtggcatgtcaatacctcaagtaatgactactggagatgctcatgccaaacttgcctcaagaatc |
384 |
Q |
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| T |
6884986 |
tgttgatacagaaattgttatatctggtggcatgtcaatacctcaagtaatgactactggagatgctcatgccaaacttgcctcaagaatc |
6884896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 6885232 - 6885097
Alignment:
| Q |
1 |
gagctttattgtgtttatattcccaccaatcacttgtaccttggagatatttttctcgttagcccaaatgatattttgaggcctaatctctctgttcgtg |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6885232 |
gagctttattgtgtttatattcccaccaatcacctgtaccttggagatatttttctcgttagcccaaatgatattttgaggcctaatctctctgttcgtg |
6885133 |
T |
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| Q |
101 |
aaggaataggtatgtataaagttccttgccacataa |
136 |
Q |
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| T |
6885132 |
aaggaataggtatgtataaagttccttgccacataa |
6885097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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