View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6119_high_3 (Length: 406)

Name: NF6119_high_3
Description: NF6119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6119_high_3
NF6119_high_3
[»] chr8 (11 HSPs)
chr8 (33-245)||(28722970-28723183)
chr8 (33-245)||(28730612-28730825)
chr8 (304-406)||(28723242-28723344)
chr8 (304-406)||(28730884-28730986)
chr8 (53-173)||(28707222-28707348)
chr8 (1-38)||(28707992-28708029)
chr8 (377-406)||(28623715-28623744)
chr8 (188-244)||(28707773-28707830)
chr8 (1-38)||(28723351-28723388)
chr8 (1-38)||(28730993-28731030)
chr8 (33-61)||(28703844-28703872)


Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 33 - 245
Target Start/End: Original strand, 28722970 - 28723183
Alignment:
Q  33 taaatcataatcaagtatcataatgaaaatatgaaaaaacttgcaagcaatatctctattcatgaatcttaacaacttgtaaggagagagaacttcaata 132  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28722970 taaatcataatcaagtatcataatgaaaatttgaaaaaacttgcaagcaatatctctattcatgaatcttaacaacttgtaaggagagagaacttcaata 28723069  T
Q  133 catatgtaatttaaatattttattttttcagtatataaatgcacatgaatattattgtagtaagcaaacaagt-accctattcgaaagaacttcgatccc 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  28723070 catatgtaatttaaatattttattttttcagtatataaatgcacatgaatattattgtagtaagcaaacaagtaaccctagtcgaaagaacttcgatccc 28723169  T
Q  232 atacagcaacacta 245  Q
    ||||||||||||||    
T  28723170 atacagcaacacta 28723183  T

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Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 33 - 245
Target Start/End: Original strand, 28730612 - 28730825
Alignment:
Q  33 taaatcataatcaagtatcataatgaaaatatgaaaaaacttgcaagcaatatctctattcatgaatcttaacaacttgtaaggagagagaacttcaata 132  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28730612 taaatcataatcaagtatcataatgaaaatttgaaaaaacttgcaagcaatatctctattcatgaatcttaacaacttgtaaggagagagaacttcaata 28730711  T
Q  133 catatgtaatttaaatattttattttttcagtatataaatgcacatgaatattattgtagtaagcaaacaagt-accctattcgaaagaacttcgatccc 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  28730712 catatgtaatttaaatattttattttttcagtatataaatgcacatgaatattattgtagtaagcaaacaagtaaccctagtcgaaagaacttcgatccc 28730811  T
Q  232 atacagcaacacta 245  Q
    ||||||||||||||    
T  28730812 atacagcaacacta 28730825  T

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Target: chr8; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 304 - 406
Target Start/End: Original strand, 28723242 - 28723344
Alignment:
Q  304 cgagtacaagtagtactaaactcaagtcataggagagagaataataaatccacccaaagacaccaaattaaggacatgctctttacttaaagaactccat 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28723242 cgagtacaagtagtactaaactcaagtcataggagagagaataataaatccacccaaagacaccaaattaaggacatgctctttacttaaagaactccat 28723341  T
Q  404 aac 406  Q
    |||    
T  28723342 aac 28723344  T

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Target: chr8; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 304 - 406
Target Start/End: Original strand, 28730884 - 28730986
Alignment:
Q  304 cgagtacaagtagtactaaactcaagtcataggagagagaataataaatccacccaaagacaccaaattaaggacatgctctttacttaaagaactccat 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28730884 cgagtacaagtagtactaaactcaagtcataggagagagaataataaatccacccaaagacaccaaattaaggacatgctctttacttaaagaactccat 28730983  T
Q  404 aac 406  Q
    |||    
T  28730984 aac 28730986  T

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Target: chr8; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 53 - 173
Target Start/End: Original strand, 28707222 - 28707348
Alignment:
Q  53 taatgaaaatatgaaaaaacttgcaagcaatatctctattcatgaatcttaacaacttgtaagg--agagagaacttcaatacatatgtaatttaaatat 150  Q
    ||||||||||||  ||||| ||||||||||||| |||| |||||||||||||||||||||||    | |||||||||| |||||||||||||||||||||    
T  28707222 taatgaaaatatctaaaaatttgcaagcaatatatctagtcatgaatcttaacaacttgtaacactatagagaacttcgatacatatgtaatttaaatat 28707321  T
Q  151 tttatttt----ttcagtatataaatg 173  Q
    ||| ||||    |||||||||||||||    
T  28707322 ttttttttttttttcagtatataaatg 28707348  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28707992 - 28708029
Alignment:
Q  1 attacacacacgacattcatatctgatgccactaaatc 38  Q
    |||||| |||||||||||||||||||||||||||||||    
T  28707992 attacagacacgacattcatatctgatgccactaaatc 28708029  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 28623715 - 28623744
Alignment:
Q  377 acatgctctttacttaaagaactccataac 406  Q
    ||||||||||||||||||||||||||||||    
T  28623715 acatgctctttacttaaagaactccataac 28623744  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 28707773 - 28707830
Alignment:
Q  188 tgtagtaagcaaacaagta-ccctattcgaaagaacttcgatcccatacagcaacact 244  Q
    |||| |||||||||||||| ||| ||| |||||||||||||||||||| |||| ||||    
T  28707773 tgtaataagcaaacaagtaacccaatttgaaagaacttcgatcccatatagcagcact 28707830  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28723351 - 28723388
Alignment:
Q  1 attacacacacgacattcatatctgatgccactaaatc 38  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  28723351 attacagacacaacattcatatctgatgccactaaatc 28723388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28730993 - 28731030
Alignment:
Q  1 attacacacacgacattcatatctgatgccactaaatc 38  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  28730993 attacagacacaacattcatatctgatgccactaaatc 28731030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 61
Target Start/End: Original strand, 28703844 - 28703872
Alignment:
Q  33 taaatcataatcaagtatcataatgaaaa 61  Q
    |||||||||||||||||||||||||||||    
T  28703844 taaatcataatcaagtatcataatgaaaa 28703872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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