View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6119_high_4 (Length: 229)
Name: NF6119_high_4
Description: NF6119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6119_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 28418437 - 28418237
Alignment:
| Q |
11 |
tgagaagaataaacggttcaaaatttttgcagagaaattggaatacattgagaatttcaaccgtgatggaaatgcgacatatgagttgggtctgaatcaa |
110 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28418437 |
tgagaagaataaacggttcaagatttttgcagagaaattggaatacatagagaatttcaaccgtgatggaaatgcgacttatgagttgggtctgaatcaa |
28418338 |
T |
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| Q |
111 |
tactcagatttaactgatgaagagtacgttgctaaatattcttgtaacaaatttcaaagcaaaataaagcactcatctatactgaatgtgagcgaaattt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
28418337 |
tactcagatttaactgatgaagagtacgttgctaaatattcttgtatcaaatttcaaagcaaagtaaactactcatctatactgaatgtgagcgaaattt |
28418238 |
T |
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| Q |
211 |
c |
211 |
Q |
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| T |
28418237 |
c |
28418237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 27348514 - 27348638
Alignment:
| Q |
11 |
tgagaagaataaacggttcaaaatttttgcagagaaattggaatacattgagaatttcaaccgtgatggaaatgcgacatatgagttgggtctgaatcaa |
110 |
Q |
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||||||| | |||||||||||||||||||| |||||||| |||||||| |||| |||||||||||||| |||| ||| |||||||||||| |||||||| |
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| T |
27348514 |
tgagaaggagaaacggttcaaaatttttgcggagaaattagaatacatagagaggttcaaccgtgatgggaatgagacttatgagttgggtttgaatcaa |
27348613 |
T |
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| Q |
111 |
tactcagatttaactgatgaagagt |
135 |
Q |
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| T |
27348614 |
ttttcagatttaacatatgaagagt |
27348638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 28003709 - 28003809
Alignment:
| Q |
11 |
tgagaagaataaacggttcaaaatttttgcagagaaattggaatacattgagaatttcaaccgtgatggaaatgcgacatatgagttgggtctgaatcaa |
110 |
Q |
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||||||| | |||||||| || ||||||||| |||| ||||| ||||| |||||||||||||||| |||||||| || ||||||||||||||||||||| |
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| T |
28003709 |
tgagaaggagaaacggtttaagatttttgcaaagaatttggagtacatcgagaatttcaaccgtgctggaaatgaaacttatgagttgggtctgaatcaa |
28003808 |
T |
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| Q |
111 |
t |
111 |
Q |
| |
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| T |
28003809 |
t |
28003809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 28284936 - 28284812
Alignment:
| Q |
11 |
tgagaagaataaacggttcaaaatttttgcagagaaattggaatacattgagaatttcaaccgtgatggaaatgcgacatatgagttgggtctgaatcaa |
110 |
Q |
| |
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||||||| | ||||| ||||| |||||||||||||| || |||||||| |||||||| ||||||| |||||| ||| ||| ||||||||||||||||| |
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| T |
28284936 |
tgagaaggagaaacgattcaagatttttgcagagaatttagaatacatagagaattttaaccgtgctggaaaacagacttataagttgggtctgaatcaa |
28284837 |
T |
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| Q |
111 |
tactcagatttaactgatgaagagt |
135 |
Q |
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| ||| |||||||| ||||||||| |
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| T |
28284836 |
ttctctgatttaacaaatgaagagt |
28284812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 28406563 - 28406661
Alignment:
| Q |
11 |
tgagaagaataaacggttcaaaatttttgcagagaaattggaatacattgagaatttcaaccgtgatggaaatgcgacatatgagttgggtctgaatca |
109 |
Q |
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||||||| | |||| |||||| ||||||||||| ||||||||||| | |||| ||||||||||||||||||| ||| ||| |||||||||||||||| |
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| T |
28406563 |
tgagaaggagaaacagttcaagatttttgcagaaaaattggaatatgtagagaggttcaaccgtgatggaaatgagacttataagttgggtctgaatca |
28406661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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