View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6119_low_1 (Length: 430)

Name: NF6119_low_1
Description: NF6119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6119_low_1
NF6119_low_1
[»] chr5 (10 HSPs)
chr5 (10-409)||(37515332-37515728)
chr5 (35-215)||(37480234-37480413)
chr5 (86-211)||(2651623-2651751)
chr5 (71-214)||(34928780-34928935)
chr5 (133-214)||(22473584-22473665)
chr5 (143-211)||(22658896-22658965)
chr5 (93-149)||(19824592-19824648)
chr5 (143-214)||(27554873-27554945)
chr5 (154-211)||(14151895-14151953)
chr5 (85-135)||(21355257-21355307)
[»] chr7 (16 HSPs)
chr7 (38-213)||(16876678-16876854)
chr7 (35-215)||(46425277-46425458)
chr7 (35-211)||(23185867-23186043)
chr7 (35-214)||(18867888-18868067)
chr7 (73-214)||(34328095-34328235)
chr7 (86-214)||(2628386-2628526)
chr7 (85-212)||(9488721-9488861)
chr7 (73-149)||(32279321-32279395)
chr7 (96-161)||(48068390-48068455)
chr7 (85-149)||(42971670-42971734)
chr7 (93-149)||(37685217-37685271)
chr7 (94-148)||(11369083-11369137)
chr7 (112-149)||(15667895-15667932)
chr7 (96-149)||(17248721-17248774)
chr7 (112-148)||(32204769-32204805)
chr7 (85-149)||(42691096-42691160)
[»] chr3 (10 HSPs)
chr3 (36-214)||(4037092-4037271)
chr3 (35-212)||(49279439-49279616)
chr3 (76-215)||(39994182-39994322)
chr3 (73-211)||(11233494-11233633)
chr3 (69-217)||(39972976-39973116)
chr3 (80-209)||(10688603-10688744)
chr3 (140-207)||(39350750-39350818)
chr3 (145-216)||(47548907-47548979)
chr3 (94-212)||(50700026-50700151)
chr3 (100-141)||(43168754-43168795)
[»] chr6 (10 HSPs)
chr6 (51-214)||(9928227-9928391)
chr6 (37-215)||(22469651-22469830)
chr6 (35-211)||(31743810-31743986)
chr6 (51-173)||(7506598-7506720)
chr6 (93-148)||(6139326-6139381)
chr6 (98-149)||(9549379-9549430)
chr6 (143-207)||(8585771-8585835)
chr6 (98-149)||(3037401-3037452)
chr6 (145-211)||(9549441-9549506)
chr6 (86-146)||(6793495-6793555)
[»] chr1 (16 HSPs)
chr1 (35-203)||(27907653-27907822)
chr1 (69-212)||(48843360-48843504)
chr1 (80-214)||(51748547-51748682)
chr1 (35-176)||(27032299-27032441)
chr1 (35-216)||(48915125-48915316)
chr1 (86-217)||(48914932-48915075)
chr1 (86-217)||(48915323-48915466)
chr1 (85-214)||(19456261-19456401)
chr1 (85-214)||(50539678-50539819)
chr1 (85-149)||(19431417-19431481)
chr1 (73-149)||(26478550-26478626)
chr1 (87-149)||(5398049-5398111)
chr1 (85-149)||(24671156-24671220)
chr1 (93-149)||(49177403-49177459)
chr1 (80-144)||(49177240-49177304)
chr1 (84-148)||(7537011-7537075)
[»] chr8 (16 HSPs)
chr8 (75-211)||(33938556-33938693)
chr8 (73-214)||(16467587-16467729)
chr8 (37-211)||(16499773-16499952)
chr8 (35-214)||(4834920-4835111)
chr8 (60-211)||(16508698-16508850)
chr8 (88-149)||(41474305-41474366)
chr8 (93-169)||(25391119-25391195)
chr8 (86-169)||(25494365-25494448)
chr8 (94-149)||(35793178-35793233)
chr8 (93-169)||(25677432-25677508)
chr8 (258-327)||(9418991-9419061)
chr8 (84-149)||(12964329-12964394)
chr8 (93-169)||(25358078-25358154)
chr8 (112-149)||(20896214-20896251)
chr8 (112-149)||(34956261-34956298)
chr8 (125-169)||(36623146-36623190)
[»] scaffold0176 (1 HSPs)
scaffold0176 (35-212)||(15050-15219)
[»] chr2 (16 HSPs)
chr2 (76-215)||(15141871-15142011)
chr2 (94-211)||(19037010-19037128)
chr2 (35-162)||(3496792-3496923)
chr2 (88-214)||(6752024-6752162)
chr2 (58-149)||(23395906-23395997)
chr2 (86-215)||(41069622-41069763)
chr2 (35-116)||(39707460-39707541)
chr2 (80-149)||(11226141-11226210)
chr2 (85-214)||(31750464-31750603)
chr2 (93-149)||(32832620-32832676)
chr2 (35-93)||(19037148-19037206)
chr2 (86-149)||(39728987-39729050)
chr2 (93-149)||(36562767-36562823)
chr2 (86-146)||(862484-862544)
chr2 (86-146)||(1208617-1208677)
chr2 (43-79)||(6752033-6752069)
[»] chr4 (12 HSPs)
chr4 (92-217)||(9116192-9116318)
chr4 (85-212)||(29544114-29544253)
chr4 (43-212)||(46079292-46079473)
chr4 (86-214)||(52673148-52673288)
chr4 (87-144)||(53406521-53406578)
chr4 (93-149)||(29724376-29724432)
chr4 (84-149)||(47907278-47907343)
chr4 (94-149)||(44015439-44015494)
chr4 (98-149)||(30643619-30643670)
chr4 (98-149)||(40202275-40202326)
chr4 (71-144)||(29693182-29693253)
chr4 (112-149)||(53176866-53176903)
[»] scaffold0289 (1 HSPs)
scaffold0289 (112-149)||(20312-20349)
[»] scaffold0085 (1 HSPs)
scaffold0085 (120-149)||(31606-31635)


Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 10 - 409
Target Start/End: Complemental strand, 37515728 - 37515332
Alignment:
Q  10 gacatcatcatgtcacttccctacaggtagcatttgggtgtcatagttttttggtaccattgatgtcataggtaactttgtgtctatctctctcttaaca 109  Q
    |||||||||||  |||||||||||  |||||| |||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||    
T  37515728 gacatcatcattacacttccctaccagtagcacttgggtgtcatagttttttgataccattggtatcataggtaactttgtgtctatctctctcttaaca 37515629  T
Q  110 actcattatctatcatctaaataatttattttaatcattctctttcatctaaaatgaacttatgtcatcaatggcaccaaaaactatggcacccaagtat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||  |||    
T  37515628 actcattatctatcatctaaataatttattttaatcattctcttttatctaaaatgaacttatgtcatcaataacaccaaaaactatggcacccagatat 37515529  T
Q  210 ttccccttcgctacatagagcatgctgcacttctacaacttgcaatcacacacgtgaacttcctctttgtgttagctggaaatttcagaaagttctggaa 309  Q
    ||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37515528 ttccc-ttcgctaca--gagcatgctgcacttctacaacttgcaatcacacacgtgaacttcctctttgtgttagctggaaatttcagaaagttctggaa 37515432  T
Q  310 acattttgcatgtgcaaatttatgctttcttgccaagcatcaacttggagggcaaatgtcattcaaattaaagcacaaacatatgttttatgaagtggcc 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  37515431 acattttgcatgtgcaaatttatgctttcttgccaagcatcaacttggagggcaaatgtcattcaaattaaagcacaaacatatattttatgaaggggcc 37515332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 35 - 215
Target Start/End: Original strand, 37480234 - 37480413
Alignment:
Q  35 ggtagcatttgggtgtcatagttttttggtaccattgatgtcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataat 134  Q
    ||||||| ||| |||  |||||||||||||  ||||| ||  ||| |||| ||||||||||||||  ||||||||||||||| ||| |||||||| ||||    
T  37480234 ggtagcacttgagtgcaatagttttttggtgtcattggtgcaataagtaattttgtgtctatctc--tcttaacaactcattctctctcatctaagtaat 37480331  T
Q  135 ttattttaatcattctctttcatctaaaatgaacttatgtcatcaatggcacc-aaaaactatggcacccaagtatttcccc 215  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||| |||| ||||||||| ||||||||||||||||||    
T  37480332 ttattttaatcattttctttcatctaaaatgaacttatgtcaccaatgacaccaaaaaactatagcacccaagtatttcccc 37480413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 86 - 211
Target Start/End: Original strand, 2651623 - 2651751
Alignment:
Q  86 tttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc--tctttcatctaaaatgaacttatgtcatcaatgg 183  Q
    ||||||| ||||||||||||| ||||  ||| | | ||||||||||||||||||||||||||||  || | |||||||||||||||||||||| ||||||    
T  2651623 tttgtgtttatctctctcttaccaacatattctatctcatctaaataatttattttaatcattcattcatacatctaaaatgaacttatgtcaccaatgg 2651722  T
Q  184 cacc-aaaaactatggcacccaagtattt 211  Q
    |||| ||||||||||||||||||||||||    
T  2651723 caccaaaaaactatggcacccaagtattt 2651751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 34928780 - 34928935
Alignment:
Q  71 gatgtcataggtaactttgtgtctatctctctcttaacaactcattatctat--catctaaataatttattttaatcattc-----------tctttcat 157  Q
    |||||||| |||| |||||| |||||||||||  |||||||| ||| ||| |  |||||||||||||||||||||||||||           ||| ||||    
T  34928780 gatgtcattggtacctttgtatctatctctct--taacaacttattctctctttcatctaaataatttattttaatcattcatttatcattctctctcat 34928877  T
Q  158 ctaaaatgaacttatgtcatcaatggcac-caaaaactatggcacccaagtatttccc 214  Q
    ||||||||||| ||||||||||||| |||  |||||||||||||||||||||||||||    
T  34928878 ctaaaatgaacatatgtcatcaatgacactaaaaaactatggcacccaagtatttccc 34928935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 22473584 - 22473665
Alignment:
Q  133 atttattttaatcattctctttcatctaaaatgaacttatgtcatcaatggcacc-aaaaactatggcacccaagtatttccc 214  Q
    |||||||||||| ||||||| ||||||||||||||| ||||||| | ||||| || |||||||||||||||||||||||||||    
T  22473584 atttattttaattattctctctcatctaaaatgaacatatgtca-ccatggcgccaaaaaactatggcacccaagtatttccc 22473665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 22658896 - 22658965
Alignment:
Q  143 atcattctctttcatctaaaatgaacttatgtcatcaatggcacc-aaaaactatggcacccaagtattt 211  Q
    |||||||||||||||||||||||||||||||| | |||| ||||| ||||||||||||||| || |||||    
T  22658896 atcattctctttcatctaaaatgaacttatgttaccaatcgcaccaaaaaactatggcacctaaatattt 22658965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 19824592 - 19824648
Alignment:
Q  93 ctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc 149  Q
    |||||||||||| ||| | ||||| ||| ||||||||||||||||||||||||||||    
T  19824592 ctatctctctctaaaccattcattctctctcatctaaataatttattttaatcattc 19824648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 27554945 - 27554873
Alignment:
Q  143 atcattctctttcatctaaaatgaacttatgtcatcaatggca-ccaaaaactatggcacccaagtatttccc 214  Q
    |||||| ||| ||||||||||| ||||||| ||||||||||||   ||||||||||||||| |||||||||||    
T  27554945 atcattttctctcatctaaaataaacttatatcatcaatggcagtaaaaaactatggcaccaaagtatttccc 27554873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 14151953 - 14151895
Alignment:
Q  154 tcatctaaaatgaacttatgtcatcaatggca-ccaaaaactatggcacccaagtattt 211  Q
    ||||||||||||||| ||||||||||||| || | ||||||||||  ||||||||||||    
T  14151953 tcatctaaaatgaacctatgtcatcaatgacatcaaaaaactatgatacccaagtattt 14151895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 21355307 - 21355257
Alignment:
Q  85 ctttgtgtctatctctctcttaacaactcattatctatcatctaaataatt 135  Q
    |||||| ||||||||||||||||| | ||||| ||| ||||||||||||||    
T  21355307 ctttgtttctatctctctcttaaccattcattctctctcatctaaataatt 21355257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 38 - 213
Target Start/End: Complemental strand, 16876854 - 16876678
Alignment:
Q  38 agcatttgggtgtcatagttttttggtaccattgatgtcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataattta 137  Q
    |||| ||||||| |||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  16876854 agcacttgggtgccatagttttttggtgccattggtgccataggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataattta 16876755  T
Q  138 ttttaatcattctctttcatctaaaatgaacttatgtcatcaatggcacca-aaaactatggcacccaagtatttcc 213  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  16876754 ttttaatcattctctttcatctaaaatgaacttatatcatcaatggcaccaaaaaactatggcacccaagtatttcc 16876678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 35 - 215
Target Start/End: Complemental strand, 46425458 - 46425277
Alignment:
Q  35 ggtagcatttgggtgtcatagttttttggtaccattgatgtcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataat 134  Q
    ||||||| |||||||  ||||||||||||| ||||||||  | ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  46425458 ggtagcacttgggtgctatagttttttggtgccattgatcccttaggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataat 46425359  T
Q  135 ttattttaatcattctctttcatctaaaatgaacttatgtcatcaatggcacca-aaaactatggcacccaagtatttcccc 215  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||    
T  46425358 ttattttaatcattctctttcatctaaaatgaacctatgtcaccaatggcaccaaaaaactatggcacccaagtatttcccc 46425277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 35 - 211
Target Start/End: Complemental strand, 23186043 - 23185867
Alignment:
Q  35 ggtagcatttgggtgtcatagttttttggtaccattgatgtcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataat 134  Q
    ||||||| ||||||| |||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  23186043 ggtagcacttgggtgccatagttttttggtgccattggtgccataggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataat 23185944  T
Q  135 ttattttaatcattctctttcatctaaaatgaacttatgtcatcaatggcac-caaaaactatggcacccaagtattt 211  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||  |||||||||||||||||| |||||    
T  23185943 ttattttaatcattctctttcatctaaaatgaac-tatgtcaccaatggcactaaaaaactatggcacccaaatattt 23185867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 35 - 214
Target Start/End: Complemental strand, 18868067 - 18867888
Alignment:
Q  35 ggtagcatttgggtgtcatagttttttggtaccattgatgtcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataat 134  Q
    ||||||| ||||||||||||||| |||||| |||||| || ||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  18868067 ggtagcacttgggtgtcatagttctttggtgccattggtgccat-ggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataat 18867969  T
Q  135 ttattttaatcattctctttcatctaaaatgaacttatgtcatcaatggcac-caaaaactatggcacccaagtatttccc 214  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||| |||  ||||||||||||| |||||||||||||    
T  18867968 ttattttaatcattctctttcatctaaaatgaacctatgtcaccaatgacacaaaaaaactatggcatccaagtatttccc 18867888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 73 - 214
Target Start/End: Original strand, 34328095 - 34328235
Alignment:
Q  73 tgtcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattctctttcatctaaaatgaacttat 172  Q
    |||||||| ||||||||||||||||||  ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34328095 tgtcatagataactttgtgtctatctc--tcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaacctat 34328192  T
Q  173 gtcatcaatggcacc-aaaaactatggcacccaagtatttccc 214  Q
    |||| |||||||||| |||||||||||||||||||||||||||    
T  34328193 gtcaccaatggcaccaaaaaactatggcacccaagtatttccc 34328235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 86 - 214
Target Start/End: Complemental strand, 2628526 - 2628386
Alignment:
Q  86 tttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcatt-----------ctctttcatctaaaatgaacttatgt 174  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||           |||| |||||||||||||||||||||    
T  2628526 tttgtgtctatctctctcttaacaactcattctctctcatctaaatagtttattttaatcatttattcatcattctctctcatctaaaatgaacttatgt 2628427  T
Q  175 catcaatggcacca-aaaactatggcacccaagtatttccc 214  Q
    || ||||||||||| |||||||||||| |||||||||||||    
T  2628426 caccaatggcaccaaaaaactatggcatccaagtatttccc 2628386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 85 - 212
Target Start/End: Complemental strand, 9488861 - 9488721
Alignment:
Q  85 ctttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc------------tctttcatctaaaatgaacttat 172  Q
    |||||||| |||||||||||||||||||||||  ||||  |||||||||||||||||||||||||             || |||||||||||||||||||    
T  9488861 ctttgtgtatatctctctcttaacaactcattccctattctctaaataatttattttaatcattcattcatcattctcctctcatctaaaatgaacttat 9488762  T
Q  173 gtcatcaatggcacc-aaaaactatggcacccaagtatttc 212  Q
    |||||||||  |||| ||||| |||||||||||| ||||||    
T  9488761 gtcatcaataacaccaaaaaattatggcacccaaatatttc 9488721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 149
Target Start/End: Complemental strand, 32279395 - 32279321
Alignment:
Q  73 tgtcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc 149  Q
    |||||| |||| ||||||||||||||||||||||||||| ||   ||| |||| |||||||||||||||||| ||||    
T  32279395 tgtcattggtatctttgtgtctatctctctcttaacaaccca--ctctctcatttaaataatttattttaattattc 32279321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 48068455 - 48068390
Alignment:
Q  96 tctctctcttaacaactcattatctatcatctaaataatttattttaatcattctctttcatctaa 161  Q
    ||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||  ||| ||||||||    
T  48068455 tctctctcttaaccacttattatctctcatctaaataatctattttaatcatcttctctcatctaa 48068390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 42971734 - 42971670
Alignment:
Q  85 ctttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc 149  Q
    |||||| ||||||||||||||||| |   ||| ||| ||||||||||||||||||||||||||||    
T  42971734 ctttgtttctatctctctcttaaccatcaattctctctcatctaaataatttattttaatcattc 42971670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 37685271 - 37685217
Alignment:
Q  93 ctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc 149  Q
    |||||||||||||||| | ||||| |||  |||||||||||||||||||||||||||    
T  37685271 ctatctctctcttaaccattcattctct--catctaaataatttattttaatcattc 37685217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 11369137 - 11369083
Alignment:
Q  94 tatctctctcttaacaactcattatctatcatctaaataatttattttaatcatt 148  Q
    ||||||||||||||| | | ||| ||| || ||||||||||||||||||||||||    
T  11369137 tatctctctcttaaccatttattttctctcgtctaaataatttattttaatcatt 11369083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 15667895 - 15667932
Alignment:
Q  112 tcattatctatcatctaaataatttattttaatcattc 149  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  15667895 tcattatctctcatttaaataatttattttaatcattc 15667932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 17248774 - 17248721
Alignment:
Q  96 tctctctcttaacaactcattatctatcatctaaataatttattttaatcattc 149  Q
    ||||||||||||| | ||||| ||| | |||||||||||||| |||||||||||    
T  17248774 tctctctcttaaccaatcattttctctaatctaaataatttaatttaatcattc 17248721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 32204769 - 32204805
Alignment:
Q  112 tcattatctatcatctaaataatttattttaatcatt 148  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  32204769 tcattatctctcatataaataatttattttaatcatt 32204805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 42691160 - 42691096
Alignment:
Q  85 ctttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc 149  Q
    |||||| |||||||||||| |||  | | ||| ||| ||||| ||||||||||||||||||||||    
T  42691160 ctttgtctctatctctctcctaattaataattctctctcatcaaaataatttattttaatcattc 42691096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 8e-71; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 36 - 214
Target Start/End: Original strand, 4037092 - 4037271
Alignment:
Q  36 gtagcatttgggtgtcatagttttttggtaccattgatgtcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataatt 135  Q
    |||||| ||||||| |||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  4037092 gtagcacttgggtgccatagttttttggtgccattggtgccataggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatt 4037191  T
Q  136 tattttaatcattctctttcatctaaaatgaacttatgtcatcaatggcacc-aaaaactatggcacccaagtatttccc 214  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||    
T  4037192 tattttaatcattctctttcatctaaaatgaacctatgtcaccaatggcaccaaaaaactatggcacccaagtatttccc 4037271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 35 - 212
Target Start/End: Original strand, 49279439 - 49279616
Alignment:
Q  35 ggtagcatttgggtgtcatagttttttggtaccattgatgtcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataat 134  Q
    ||||||| |||| || ||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  49279439 ggtagcacttggatgccatagttttttggtgtcattggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataat 49279538  T
Q  135 ttattttaatcattctctttcatctaaaatgaacttatgtcatcaatggca-ccaaaaactatggcacccaagtatttc 212  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||| || | |||||||||||||||||| ||||||    
T  49279539 ttattttaatcattctctttcatctaaaatgaacttatg-caccaatgacatcaaaaaactatggcacccaaatatttc 49279616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 76 - 215
Target Start/End: Original strand, 39994182 - 39994322
Alignment:
Q  76 cataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattctctttcatctaaaatgaacttatgtc 175  Q
    ||||||||||||||| ||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39994182 cataggtaactttgtatctatctctcttttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaattaacttatgtc 39994281  T
Q  176 atcaatggcacc-aaaaactatggcacccaagtatttcccc 215  Q
    | ||||| |||| ||||||||||||||||||||||||||||    
T  39994282 accaatgacaccaaaaaactatggcacccaagtatttcccc 39994322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 73 - 211
Target Start/End: Original strand, 11233494 - 11233633
Alignment:
Q  73 tgtcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattctctttcatctaaaatgaacttat 172  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11233494 tgtcagaggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaataaacttat 11233593  T
Q  173 gtcatcaatggcac-caaaaactatggcacccaagtattt 211  Q
    |||||||||| |||  |||||||||| |||||||||||||    
T  11233594 gtcatcaatgacactaaaaaactatgacacccaagtattt 11233633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 69 - 217
Target Start/End: Original strand, 39972976 - 39973116
Alignment:
Q  69 ttgatgtcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattctctttcatctaaaatgaac 168  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  39972976 ttgatgccataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattctctttcatctaaaatgaac 39973075  T
Q  169 ttatgtcatcaatggcaccaaaaactatggcacccaagtatttcccctt 217  Q
     ||| ||| ||        ||||||||||||||||||||||||||||||    
T  39973076 ctatatcacca--------aaaaactatggcacccaagtatttcccctt 39973116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 80 - 209
Target Start/End: Original strand, 10688603 - 10688744
Alignment:
Q  80 ggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataatttatttta-----------atcattctctttcatctaaaatgaac 168  Q
    |||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||           |||||||||| |||||||||||||||    
T  10688603 ggtacctttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattcattcatcattctctctcatctaaaatgaac 10688702  T
Q  169 ttatgtcatcaatggcacc-aaaaactatggcacccaagtat 209  Q
    ||||||||||||||  ||| ||||||||| ||||||||||||    
T  10688703 ttatgtcatcaatgataccaaaaaactatagcacccaagtat 10688744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 39350818 - 39350750
Alignment:
Q  140 ttaatcattctctttcatctaaaatgaacttatgtcatcaatggcacca-aaaactatggcacccaagt 207  Q
    ||||||||||||||||||||||||||||| |||| || ||||||||||| |||||||||||||||||||    
T  39350818 ttaatcattctctttcatctaaaatgaacctatggcaccaatggcaccaaaaaactatggcacccaagt 39350750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 47548907 - 47548979
Alignment:
Q  145 cattctctttcatctaaaatgaacttatgtcatcaatggcacc-aaaaactatggcacccaagtatttcccct 216  Q
    |||||||| ||||||||||||||| ||||| | |||||||||| |||||| ||||||||||||||||||||||    
T  47548907 cattctctctcatctaaaatgaacctatgttaccaatggcaccaaaaaaccatggcacccaagtatttcccct 47548979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 94 - 212
Target Start/End: Original strand, 50700026 - 50700151
Alignment:
Q  94 tatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc---------tctttcatctaaaatgaacttatgtcatcaatggc 184  Q
    ||||||||||||||||   |||| ||| || ||||||||||||||||||||||||          ||| ||||||||||||||||||||||| |||||||    
T  50700026 tatctctctcttaaca---cattctctctcgtctaaataatttattttaatcatttattcatcattctctcatctaaaatgaacttatgtcaccaatggc 50700122  T
Q  185 ac-caaaaactatggcacccaagtatttc 212  Q
    ||  ||||||||| ||| |||||||||||    
T  50700123 actaaaaaactatagcatccaagtatttc 50700151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 43168795 - 43168754
Alignment:
Q  100 tctcttaacaactcattatctatcatctaaataatttatttt 141  Q
    ||||| ||| ||||||||||| ||||||||||||||||||||    
T  43168795 tctctcaactactcattatctttcatctaaataatttatttt 43168754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 51 - 214
Target Start/End: Original strand, 9928227 - 9928391
Alignment:
Q  51 catagttttttggtaccattgatgtcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattct 150  Q
    |||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  9928227 catagttttttggtgccattggtgccataggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattct 9928326  T
Q  151 ctttcatctaaaatgaacttatgtcatcaatggcacc-aaaaactatggcacccaagtatttccc 214  Q
    |||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||    
T  9928327 ctttcatctaaaatgaacctatgtcaccaatggcaccaaaaaactatggcacccaagtatttccc 9928391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 37 - 215
Target Start/End: Original strand, 22469651 - 22469830
Alignment:
Q  37 tagcatttgggtgtcatagttttttggtaccattgatgtcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataattt 136  Q
    ||||| ||||||| ||||||||||||||  ||||| || ||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||    
T  22469651 tagcacttgggtgccatagttttttggtgtcattggtgccataggtaactttgtgtctatctctttcttaacaactcattctctctcatctaaataattt 22469750  T
Q  137 attttaatcattctctttcatctaaaatgaacttatgtcatcaatggcacc-aaaaactatggcacccaagtatttcccc 215  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||| |||||||||||    
T  22469751 attttaatcattctctttcatctaaaatgaacctatgtcaccaatggcaccaaaaaactatggcacccgagtatttcccc 22469830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 35 - 211
Target Start/End: Original strand, 31743810 - 31743986
Alignment:
Q  35 ggtagcatttgggtgtcatagttttttggtaccattgatgtcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataat 134  Q
    |||| ||||||||||||||||||||||| | | |||| |||||||| ||  ||||||||||||||||| ||||||||| ||| |||  ||||||||||||    
T  31743810 ggtaacatttgggtgtcatagttttttgatgctattggtgtcatagatagttttgtgtctatctctcttttaacaacttattctct--catctaaataat 31743907  T
Q  135 ttattttaatcattctctttcatctaaaatgaacttatgtcatcaatggca--ccaaaaactatggcacccaagtattt 211  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||    |||||||||||||||||| |||||    
T  31743908 ttattttaatcattctctttcatctaaaatgaacttatgttaccaatggcaataaaaaaactatggcacccaaatattt 31743986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 51 - 173
Target Start/End: Original strand, 7506598 - 7506720
Alignment:
Q  51 catagttttttggtaccattgatgtcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattct 150  Q
    ||||||||||||||  ||||| || ||||||||||||| | | ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  7506598 catagttttttggtgtcattggtgccataggtaactttatatttatctctctcttaacaactcattctctctcatctaaataatttattttaatcattct 7506697  T
Q  151 ctttcatctaaaatgaacttatg 173  Q
    |||||||||||||||||| ||||    
T  7506698 ctttcatctaaaatgaacatatg 7506720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 148
Target Start/End: Original strand, 6139326 - 6139381
Alignment:
Q  93 ctatctctctcttaacaactcattatctatcatctaaataatttattttaatcatt 148  Q
    |||||||||| ||||| | ||||| ||| |||||||||||||||||||||||||||    
T  6139326 ctatctctcttttaaccattcattctctctcatctaaataatttattttaatcatt 6139381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 9549379 - 9549430
Alignment:
Q  98 tctctcttaacaactcattatctatcatctaaataatttattttaatcattc 149  Q
    ||||||||||||||||||| ||| | || |||||||||||||||||||||||    
T  9549379 tctctcttaacaactcattctctctaatttaaataatttattttaatcattc 9549430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 8585771 - 8585835
Alignment:
Q  143 atcattctctttcatctaaaatgaacttatgtcatcaatggcaccaaaaactatggcacccaagt 207  Q
    ||||||||||||||||||||||  ||| ||||||  |||| || ||||||||||| |||||||||    
T  8585771 atcattctctttcatctaaaatacactaatgtcactaatgtcatcaaaaactatgtcacccaagt 8585835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 3037452 - 3037401
Alignment:
Q  98 tctctcttaacaactcattatctatcatctaaataatttattttaatcattc 149  Q
    ||||||||||| | ||||| ||| ||||||||| ||||||||||||||||||    
T  3037452 tctctcttaaccattcattctctttcatctaaaaaatttattttaatcattc 3037401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 9549441 - 9549506
Alignment:
Q  145 cattctctttcatctaaaatgaacttatgtcatcaatggcaccaaaaactatggcacccaagtattt 211  Q
    |||||||| |||||||||| |||| |||||||| ||||| ||  |||||||| ||||||||||||||    
T  9549441 cattctctctcatctaaaacgaacctatgtcattaatgg-acataaaactatagcacccaagtattt 9549506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 6793495 - 6793555
Alignment:
Q  86 tttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatca 146  Q
    ||||| ||||||||| || |||| | | ||||||| ||||| |||||||||||||||||||    
T  6793495 tttgtctctatctctatcctaaccaataattatctctcatcaaaataatttattttaatca 6793555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 27907653 - 27907822
Alignment:
Q  35 ggtagcatttgggtgtcatagttttttggtaccattgatgtcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataat 134  Q
    ||||||| |||| || |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  27907653 ggtagcacttggatgccatagttttttggtgccattggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataat 27907752  T
Q  135 ttattttaatcattctctttcatctaaaatgaacttatgtcatcaatggcacc-aaaaactatggcaccc 203  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||| |||| ||||||||||||||||    
T  27907753 ttattttaatcattctctttcatctaaaatgaacctatgtcaccaatgacaccaaaaaactatggcaccc 27907822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 69 - 212
Target Start/End: Original strand, 48843360 - 48843504
Alignment:
Q  69 ttgatgtcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattctctttcatctaaaatgaac 168  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48843360 ttgatgtcataggtaactttgtatctatctctctcttaacaattcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 48843459  T
Q  169 ttatgtcatcaatggcacc-aaaaactatggcacccaagtatttc 212  Q
     ||||||| |||||||||| |||||||||||||||||||||||||    
T  48843460 ctatgtcaccaatggcaccaaaaaactatggcacccaagtatttc 48843504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 80 - 214
Target Start/End: Original strand, 51748547 - 51748682
Alignment:
Q  80 ggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattctctttcatctaaaatgaacttatgtcatca 179  Q
    ||||||||||||||||||| ||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||    
T  51748547 ggtaactttgtgtctatctttcttttaacaactcattctctctcatctaaataatttattttaatcattctctttcatttaaaatgaatctatgtcatca 51748646  T
Q  180 atggcacc-aaaaactatggcacccaagtatttccc 214  Q
    |||||||| ||||||||||||| |||||||||||||    
T  51748647 atggcaccaaaaaactatggcatccaagtatttccc 51748682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 35 - 176
Target Start/End: Complemental strand, 27032441 - 27032299
Alignment:
Q  35 ggtagcatttgggtgtcatagtttttt-ggtaccattgatgtcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataa 133  Q
    ||||||| ||||||| ||||||||||| |||  ||||| |||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  27032441 ggtagcacttgggtgccatagtttttttggtgtcattggtgtcatgggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataa 27032342  T
Q  134 tttattttaatcattctctttcatctaaaatgaacttatgtca 176  Q
    ||||||||||||||||||| |||| |||||||||| |||||||    
T  27032341 tttattttaatcattctctctcatataaaatgaacatatgtca 27032299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 35 - 216
Target Start/End: Complemental strand, 48915316 - 48915125
Alignment:
Q  35 ggtagcatttgggtgtcatagttttttggtaccattgatgtcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataat 134  Q
    ||||||| ||||||||||| |  ||||||| |||||| || ||| | ||  ||||||||||||||||||||||||||||||| ||| ||||| |||||||    
T  48915316 ggtagcacttgggtgtcattggcttttggtgccattggtgccattgatacttttgtgtctatctctctcttaacaactcattctctctcatcaaaataat 48915217  T
Q  135 ttattttaatcattc---------tctttcatctaaaatgaacttatgtcatcaatggcac-caaaaactatggcacccaagtatttcccct 216  Q
    |||||||||||||||         ||| ||||||||||||||| ||||||| ||||| |||  |||||||||||||||||||||||||||||    
T  48915216 ttattttaatcattcattcatcattctctcatctaaaatgaacctatgtcaccaatgtcacaaaaaaactatggcacccaagtatttcccct 48915125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 86 - 217
Target Start/End: Complemental strand, 48915075 - 48914932
Alignment:
Q  86 tttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc-----------tctttcatctaaaatgaacttatgt 174  Q
    ||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||           ||| |||||||||||||||||||||    
T  48915075 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattcattcatcattctctctcatctaaaatgaacttatgt 48914976  T
Q  175 catcaatggcac-caaaaactatggcacccaagtatttcccctt 217  Q
    || ||||| |||  ||||||||||||||||||||||||||||||    
T  48914975 caccaatgtcacaaaaaaactatggcacccaagtatttcccctt 48914932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 86 - 217
Target Start/End: Complemental strand, 48915466 - 48915323
Alignment:
Q  86 tttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc-----------tctttcatctaaaatgaacttatgt 174  Q
    ||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||           ||| |||||||||||||||||||||    
T  48915466 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattcattcatcattctctctcatctaaaatgaacttatgt 48915367  T
Q  175 catcaatggcac-caaaaactatggcacccaagtatttcccctt 217  Q
    || ||||| |||  ||||||||||||||||||||||||||||||    
T  48915366 caccaatgtcacaaaaaaactatggcacccaagtatttcccctt 48915323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 85 - 214
Target Start/End: Complemental strand, 19456401 - 19456261
Alignment:
Q  85 ctttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcat-----------tctctttcatctaaaatgaacttatg 173  Q
    |||||||||||||||| ||||||||| ||||| ||| ||||||||||||||||||||||||||           ||||| ||||||||||||||  ||||    
T  19456401 ctttgtgtctatctctttcttaacaattcattctctctcatctaaataatttattttaatcatctattcatcattctctctcatctaaaatgaatctatg 19456302  T
Q  174 tcatcaatggcaccaaaaactatggcacccaagtatttccc 214  Q
    ||| ||||| |||||||| ||||||||||||||||||||||    
T  19456301 tcaccaatgacaccaaaagctatggcacccaagtatttccc 19456261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 85 - 214
Target Start/End: Complemental strand, 50539819 - 50539678
Alignment:
Q  85 ctttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaa-----------tcattctctttcatctaaaatgaacttatg 173  Q
    |||||||||||||||||||||||||||||||| ||| | || |||||||||||||||||           ||||| ||| || |||||||||||||||||    
T  50539819 ctttgtgtctatctctctcttaacaactcattctcttttatttaaataatttattttaatcatctattcatcattatctctcttctaaaatgaacttatg 50539720  T
Q  174 tcatcaatggcaccaa-aaactatggcacccaagtatttccc 214  Q
    ||| ||||| |||||| |||||||||||||||||||||||||    
T  50539719 tcaccaatgacaccaataaactatggcacccaagtatttccc 50539678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 19431481 - 19431417
Alignment:
Q  85 ctttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc 149  Q
    |||||||||||| ||||||||||| | ||||| ||| ||||||||||||||||||||||||||||    
T  19431481 ctttgtgtctatatctctcttaaccaatcattctctctcatctaaataatttattttaatcattc 19431417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 26478550 - 26478626
Alignment:
Q  73 tgtcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc 149  Q
    |||||| |||| |||||||||||||| ||| ||||||| ||||||||| |||| ||||| |||||||||||| ||||    
T  26478550 tgtcattggtacctttgtgtctatctttcttttaacaattcattatctttcatttaaatgatttattttaattattc 26478626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 5398111 - 5398049
Alignment:
Q  87 ttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc 149  Q
    |||| ||||||||||||||||| ||||||| ||| ||||||||||| ||||||||||| ||||    
T  5398111 ttgtctctatctctctcttaaccactcattctctctcatctaaatagtttattttaataattc 5398049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 24671156 - 24671220
Alignment:
Q  85 ctttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc 149  Q
    |||||| || |||| ||||||||| ||||||| ||| |||| |||||||||||||||||||||||    
T  24671156 ctttgtttccatctttctcttaaccactcattctctctcatttaaataatttattttaatcattc 24671220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 49177403 - 49177459
Alignment:
Q  93 ctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc 149  Q
    ||||||| |||| ||  ||||||||||| ||||||||||||||||||||||||||||    
T  49177403 ctatctcgctctcaatcactcattatctttcatctaaataatttattttaatcattc 49177459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 49177240 - 49177304
Alignment:
Q  80 ggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaat 144  Q
    |||| ||||||  |||||||||| ||||| | ||||| ||| |||||||||||||||||||||||    
T  49177240 ggtatctttgttcctatctctcttttaaccattcattttctctcatctaaataatttattttaat 49177304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 7537075 - 7537011
Alignment:
Q  84 actttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcatt 148  Q
    ||||||| |||||||||||| |||| | ||| | ||| | ||| |||||||||||||||||||||    
T  7537075 actttgtctctatctctctcctaaccaatcactctcttttatcaaaataatttattttaatcatt 7537011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 7e-53; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 75 - 211
Target Start/End: Complemental strand, 33938693 - 33938556
Alignment:
Q  75 tcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattctctttcatctaaaatgaacttatgt 174  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||| ||||| ||||||||||||| |||||    
T  33938693 tcataggtaactttgtgtctatctctctcttaacaattcattctctctcatctaaataatttattttaatcattatcttttatctaaaatgaacctatgt 33938594  T
Q  175 catcaatggcacca-aaaactatggcacccaagtattt 211  Q
    |||||||||||||| |||||||||||||||||||||||    
T  33938593 catcaatggcaccaaaaaactatggcacccaagtattt 33938556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 73 - 214
Target Start/End: Original strand, 16467587 - 16467729
Alignment:
Q  73 tgtcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattctctttcatctaaaatgaacttat 172  Q
    |||||||| ||||||||||| |||||||||||||| || | ||| ||| |||||||||||||||| ||||||||||||||||||| |||||||||| |||    
T  16467587 tgtcatagataactttgtgtttatctctctcttaataatttattctctctcatctaaataatttagtttaatcattctctttcatataaaatgaacctat 16467686  T
Q  173 gtcatcaatggcacc-aaaaactatggcacccaagtatttccc 214  Q
     ||| ||||| |||| ||||||||| |||||||||||||||||    
T  16467687 atcaccaatgtcaccaaaaaactatcgcacccaagtatttccc 16467729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 37 - 211
Target Start/End: Complemental strand, 16499952 - 16499773
Alignment:
Q  37 tagcatttgggtgtcatagttttttggtaccattgatgtcataggtaactttgtgtctatctctctcttaacaactcat----tatctatcatctaaata 132  Q
    ||||| ||||||  |||||||||||||| |||||| || ||||| ||||||||||| |||||||||||||| |||| ||    | ||| |||||||||||    
T  16499952 tagcacttgggttccatagttttttggtgccattggtgccatagataactttgtgtttatctctctcttaataacttattctctctctctcatctaaata 16499853  T
Q  133 atttattttaatcattctctttcatctaaaatgaacttatgtcatcaatggcacc-aaaaactatggcacccaagtattt 211  Q
    ||||| |||||||||||||| |||| |||||||||| ||| ||| ||||| |||| ||||||||||||||||||||||||    
T  16499852 atttagtttaatcattctctctcatataaaatgaacctatatcaccaatgtcaccaaaaaactatggcacccaagtattt 16499773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 35 - 214
Target Start/End: Complemental strand, 4835111 - 4834920
Alignment:
Q  35 ggtagcatttgggtgtcatagttttttggtaccattgatgtcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataat 134  Q
    ||||||| ||||||| ||| |  ||||||| |||||| || ||| | ||  ||||||||||||| ||||||||||||||||| ||| ||| |||||||||    
T  4835111 ggtagcacttgggtgccattggcttttggtgccattggtgccattgatacttttgtgtctatctttctcttaacaactcattctctttcacctaaataat 4835012  T
Q  135 ttattttaatc-----------attctctttcatctaaaatgaacttatgtcatcaatggcacc-aaaaactatggcacccaagtatttccc 214  Q
    |||||||||||           ||||||| ||||||||||||||| ||||||| ||||  |||| |||||||||||||||||||||||||||    
T  4835011 ttattttaatcattcattcatcattctctctcatctaaaatgaacctatgtcaccaatatcaccaaaaaactatggcacccaagtatttccc 4834920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 60 - 211
Target Start/End: Complemental strand, 16508850 - 16508698
Alignment:
Q  60 ttggtaccattgatgtcataggtaactttgtgtctatctctctcttaacaactcattatctatc--atctaaataatttattttaatcattctctttcat 157  Q
    ||||| |||||| || ||||| ||||||||||| |||||||||  ||| |||| ||| ||| ||  |||||||||||||| |||||||||||||| ||||    
T  16508850 ttggtgccattggtgccatagataactttgtgtttatctctct--taataacttattctctctctcatctaaataatttagtttaatcattctctctcat 16508753  T
Q  158 ctaaaatgaacttatgtcatcaatggcacc-aaaaactatggcacccaagtattt 211  Q
     |||||||||| ||| ||| ||||| |||| ||||| ||||||||||||||||||    
T  16508752 ataaaatgaacctatatcaccaatgtcaccaaaaaaatatggcacccaagtattt 16508698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 41474366 - 41474305
Alignment:
Q  88 tgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc 149  Q
    ||||||||| ||||||||||||||| ||||||| | || |||||||||||||||||||||||    
T  41474366 tgtgtctatttctctcttaacaacttattatctcttatttaaataatttattttaatcattc 41474305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 25391195 - 25391119
Alignment:
Q  93 ctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattctctttcatctaaaatgaact 169  Q
    |||||||||||| ||| | | ||| |||||||||||| |||||||||||||||||||  | ||||||||||||||||    
T  25391195 ctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattcattctcatctaaaatgaact 25391119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 25494448 - 25494365
Alignment:
Q  86 tttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattctctttcatctaaaatgaact 169  Q
    ||||| ||||||||||||| ||| | | ||| |||||||||||| ||||||||||||||||||   | ||||||||||||||||    
T  25494448 tttgtttctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaact 25494365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 149
Target Start/End: Original strand, 35793178 - 35793233
Alignment:
Q  94 tatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc 149  Q
    ||||||||||||||| ||||||||||| |||| |||||||||||||||||| ||||    
T  35793178 tatctctctcttaactactcattatctctcatttaaataatttattttaattattc 35793233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 25677508 - 25677432
Alignment:
Q  93 ctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattctctttcatctaaaatgaact 169  Q
    |||||||||||| ||| | | ||| |||||||||||| ||||||||||||||||||   | ||||||||||||||||    
T  25677508 ctatctctctctaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaact 25677432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 327
Target Start/End: Original strand, 9418991 - 9419061
Alignment:
Q  258 cacacgtgaacttcctctttgtgttagctggaaatttcagaaagttctgga-aacattttgcatgtgcaaa 327  Q
    |||||||| |||||||||||||| |||||||||||| || || |||||||| ||| ||||||| |||||||    
T  9418991 cacacgtggacttcctctttgtgctagctggaaattccataacgttctggagaacgttttgcaagtgcaaa 9419061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 149
Target Start/End: Original strand, 12964329 - 12964394
Alignment:
Q  84 actttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc 149  Q
    ||||||||||||| ||||| ||||  | ||||| ||| ||||| ||||||||||||||||||||||    
T  12964329 actttgtgtctatttctcttttaatcaatcattctctttcatcaaaataatttattttaatcattc 12964394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 25358154 - 25358078
Alignment:
Q  93 ctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattctctttcatctaaaatgaact 169  Q
    |||||||||| | ||| | | ||| |||||||||||| ||||||||||||||||||   | ||||||||||||||||    
T  25358154 ctatctctctttaaaccattaattctctatcatctaattaatttattttaatcattgattctcatctaaaatgaact 25358078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 20896251 - 20896214
Alignment:
Q  112 tcattatctatcatctaaataatttattttaatcattc 149  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  20896251 tcattctctctcatctaaataatttattttaatcattc 20896214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 34956261 - 34956298
Alignment:
Q  112 tcattatctatcatctaaataatttattttaatcattc 149  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  34956261 tcattatttatcttctaaataatttattttaatcattc 34956298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 36623190 - 36623146
Alignment:
Q  125 tctaaataatttattttaatcattctctttcatctaaaatgaact 169  Q
    ||||||||||||||||||| |||| ||| ||||||||||| ||||    
T  36623190 tctaaataatttattttaaccattttctctcatctaaaataaact 36623146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 35 - 212
Target Start/End: Original strand, 15050 - 15219
Alignment:
Q  35 ggtagcatttgggtgtcatagttttttggtaccattgatgtcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataat 134  Q
    ||||||||||||||| ||||||||||||||         ||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| |||||||    
T  15050 ggtagcatttgggtgccatagttttttggt---------gtcataggtaactttgtgtctatctctatcttaacaactcattctctctcatcaaaataat 15140  T
Q  135 ttattttaatcattctctttcatctaaaatgaacttatgtcatcaatggcacc-aaaaactatggcacccaagtatttc 212  Q
    |||||||||||||| ||||||||||||||||||| ||||||| |||||||||| ||||| |||||||||||||||||||    
T  15141 ttattttaatcattatctttcatctaaaatgaacatatgtcaccaatggcaccaaaaaattatggcacccaagtatttc 15219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 76 - 215
Target Start/End: Original strand, 15141871 - 15142011
Alignment:
Q  76 cataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattctctttcatctaaaatgaacttatgtc 175  Q
    ||||| ||||||||||||||||||||| ||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15141871 catagataactttgtgtctatctctcttttaacaacttattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaacctatgtc 15141970  T
Q  176 atcaatggca-ccaaaaactatggcacccaagtatttcccc 215  Q
    | ||||| || | ||||||||||||||||||||||||||||    
T  15141971 accaatgacatcaaaaaactatggcacccaagtatttcccc 15142011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 94 - 211
Target Start/End: Complemental strand, 19037128 - 19037010
Alignment:
Q  94 tatctctctcttaacaactcattatctatcatctaaataatttattttaatcattctctttcatctaaaatgaacttatgtcatcaatggcac-caaaaa 192  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||  |||||    
T  19037128 tatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaacctatgtcaccaatggcactaaaaaa 19037029  T
Q  193 ctatggcacccaagtattt 211  Q
    |||||||||||||||||||    
T  19037028 ctatggcacccaagtattt 19037010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 35 - 162
Target Start/End: Complemental strand, 3496923 - 3496792
Alignment:
Q  35 ggtagcatttgggtgtcatagttttttggtaccattgatgtcataggta----actttgtgtctatctctctcttaacaactcattatctatcatctaaa 130  Q
    ||||||| ||||||| ||||||| |||||| |||||| |||||||||||    ||||||||||||||||||||||||||||||||| ||| |||||||||    
T  3496923 ggtagcacttgggtgccatagttctttggtgccattggtgtcataggtaggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaa 3496824  T
Q  131 taatttattttaatcattctctttcatctaaa 162  Q
    |||||||||||||||||||||| |||||||||    
T  3496823 taatttattttaatcattctctctcatctaaa 3496792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 88 - 214
Target Start/End: Complemental strand, 6752162 - 6752024
Alignment:
Q  88 tgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc-----------tctttcatctaaaatgaacttatgtca 176  Q
    ||||||||||||||||||||||||| | | ||| ||||||||||||||||||||||||||||           ||| |||||||||||||||||||||||    
T  6752162 tgtgtctatctctctcttaacaacttactttctctcatctaaataatttattttaatcattcatttatcattctctctcatctaaaatgaacttatgtca 6752063  T
Q  177 tcaatggcacc-aaaaactatggcacccaagtatttccc 214  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  6752062 tcaatggtaccaaaaaactatggcacccaagtatttccc 6752024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 23395906 - 23395997
Alignment:
Q  58 ttttggtaccattgatgtcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc 149  Q
    ||||||| |||||| |||||| ||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23395906 ttttggtgccattggtgtcattggtacatttgtgtctatctctctcttaacaactcattctctatcatctaaataatttattttaatcattc 23395997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 86 - 215
Target Start/End: Complemental strand, 41069763 - 41069622
Alignment:
Q  86 tttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc-----------tctttcatctaaaatgaacttatgt 174  Q
    ||||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||||           ||| ||||||||||||||| |||||    
T  41069763 tttgtgtctatctgtctcttaacaattcattctctctcatctaaataatttattttaatcattcattcatcattctctctcatctaaaatgaacctatgt 41069664  T
Q  175 catcaatggcacca-aaaactatggcacccaagtatttcccc 215  Q
    || ||||||||||| |||| ||||||||||||||||||||||    
T  41069663 caccaatggcaccaaaaaattatggcacccaagtatttcccc 41069622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 39707541 - 39707460
Alignment:
Q  35 ggtagcatttgggtgtcatagttttttggtaccattgatgtcataggtaactttgtgtctatctctctcttaacaactcatt 116  Q
    ||||||| ||||||| |||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||    
T  39707541 ggtagcacttgggtgccatagttttttggtgccattggtgccataggtaactttgtgtctatctctctcttaacaactcatt 39707460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 11226141 - 11226210
Alignment:
Q  80 ggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc 149  Q
    |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  11226141 ggtacctttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 11226210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 85 - 214
Target Start/End: Original strand, 31750464 - 31750603
Alignment:
Q  85 ctttgtgtctatctctctcttaacaactcattatctatcatctaaataatttatttta-----------atcattctctttcatctaaaatgaacttatg 173  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||  |||||||||           |||||||||| | ||||||||||||  ||||    
T  31750464 ctttgtgtctatctctctcttaacaattcattttctctcatctaaat--tttattttaatcattcattcatcattctctgtgatctaaaatgaatatatg 31750561  T
Q  174 tcatcaatggcaccaa-aaactatggcacccaagtatttccc 214  Q
    ||| |||||||||||| ||||||||||||| |||||||||||    
T  31750562 tcaccaatggcaccaacaaactatggcacctaagtatttccc 31750603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 32832676 - 32832620
Alignment:
Q  93 ctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc 149  Q
    |||||||||||||||| | ||||| ||| ||||||||||||||||||||||||||||    
T  32832676 ctatctctctcttaaccattcattctctctcatctaaataatttattttaatcattc 32832620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 19037206 - 19037148
Alignment:
Q  35 ggtagcatttgggtgtcatagttttttggtaccattgatgtcataggtaactttgtgtc 93  Q
    ||||||| ||||||| |||||||||||||| |||||| || ||||||||||||||||||    
T  19037206 ggtagcacttgggtgccatagttttttggtgccattggtgccataggtaactttgtgtc 19037148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 39728987 - 39729050
Alignment:
Q  86 tttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc 149  Q
    ||||||||||| ||| ||||| ||||  ||| ||| ||||||||||||||||||||||||||||    
T  39728987 tttgtgtctatttctttcttaccaacatattctctctcatctaaataatttattttaatcattc 39729050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 36562823 - 36562767
Alignment:
Q  93 ctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc 149  Q
    |||||||||||||||  | ||||| ||| ||||||||||||||||||||| ||||||    
T  36562823 ctatctctctcttaatcattcattctctctcatctaaataatttattttactcattc 36562767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 862484 - 862544
Alignment:
Q  86 tttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatca 146  Q
    ||||| ||||||||||||| ||| | | ||| | | |||||||||||||||||||||||||    
T  862484 tttgtttctatctctctctaaactatttattctttttcatctaaataatttattttaatca 862544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 1208617 - 1208677
Alignment:
Q  86 tttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatca 146  Q
    ||||| ||||||||||||||||| | | ||| ||| ||||  |||||||||||||||||||    
T  1208617 tttgtctctatctctctcttaaccaataattctctctcattaaaataatttattttaatca 1208677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 6752033 - 6752069
Alignment:
Q  43 ttgggtgtcatagttttttggtaccattgatgtcata 79  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  6752033 ttgggtgccatagttttttggtaccattgatgacata 6752069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 92 - 217
Target Start/End: Complemental strand, 9116318 - 9116192
Alignment:
Q  92 tctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattctctttcatctaaaatgaacttatgtcatcaatggcacc-aaa 190  Q
    ||||||||| | ||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||| |||    
T  9116318 tctatctcttttttaacaactcattctctctcatttaaataatttattttaatcattctctttcatctaaaatgaacctatgtcatcaatgagaccaaaa 9116219  T
Q  191 aactatggcacccaagtatttcccctt 217  Q
    || |||||||||||| ||||| |||||    
T  9116218 aattatggcacccaaatattttccctt 9116192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 85 - 212
Target Start/End: Complemental strand, 29544253 - 29544114
Alignment:
Q  85 ctttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc-----------tctttcatctaaaatgaacttatg 173  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||           ||| ||||||||||||||| ||||    
T  29544253 ctttgtgtctatctctctattaacaactcattctctatcatctaaataatttattttaatcattcatttatcattttctctcatctaaaatgaacatatg 29544154  T
Q  174 tcatcaatggcacc-aaaaactatggcacccaagtatttc 212  Q
    ||| |||||||||| |||||||||| ||||||||||||||    
T  29544153 tcaccaatggcaccaaaaaactatgacacccaagtatttc 29544114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 43 - 212
Target Start/End: Complemental strand, 46079473 - 46079292
Alignment:
Q  43 ttgggtgtcatagttttttggtaccattgatgtcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataatttatttta 142  Q
    ||||||| ||||||||||||||  ||||| || |||  | |  ||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||    
T  46079473 ttgggtgccatagttttttggtgtcattggtgccattagcacatttgtgtctatctgtctcttaacaactcattctctctcatctaaataatttatttta 46079374  T
Q  143 atc-----------attctctttcatctaaaatgaacttatgtcatcaatggcacc-aaaaactatggcacccaagtatttc 212  Q
    |||           ||||||| ||||||||||||||| |||||||||||||||||| |||||||||| || |||||||||||    
T  46079373 atcattcattgatcattctctctcatctaaaatgaacctatgtcatcaatggcaccaaaaaactatgtcatccaagtatttc 46079292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 86 - 214
Target Start/End: Complemental strand, 52673288 - 52673148
Alignment:
Q  86 tttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaat-----------cattctctttcatctaaaatgaacttatgt 174  Q
    ||||||||||||||||||||| ||||  ||| ||| ||||| |||||||||||||||||           |||||||| ||||||||||||||| |||||    
T  52673288 tttgtgtctatctctctcttaccaacatattctctctcatcaaaataatttattttaattattcattcatcattctctctcatctaaaatgaacctatgt 52673189  T
Q  175 catcaatggcacc-aaaaactatggcacccaagtatttccc 214  Q
    || ||||| |||| |||||||||||||||||||||||||||    
T  52673188 caccaatgacaccaaaaaactatggcacccaagtatttccc 52673148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 53406578 - 53406521
Alignment:
Q  87 ttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaat 144  Q
    |||||||||||||||||||||||| ||||| ||| | |||||||||||||||||||||    
T  53406578 ttgtgtctatctctctcttaacaattcattttctcttatctaaataatttattttaat 53406521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 29724432 - 29724376
Alignment:
Q  93 ctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc 149  Q
    |||||| ||||||||| ||||||||||| | ||||||||||||||||||||||||||    
T  29724432 ctatctttctcttaaccactcattatctcttatctaaataatttattttaatcattc 29724376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 149
Target Start/End: Original strand, 47907278 - 47907343
Alignment:
Q  84 actttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc 149  Q
    |||||||||||||||||||| |||  | |||| |||| ||||| ||||||||||||||||||||||    
T  47907278 actttgtgtctatctctctcataaggaatcatcatctctcatcaaaataatttattttaatcattc 47907343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 44015494 - 44015439
Alignment:
Q  94 tatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc 149  Q
    ||||||||||||||  | || |||||| ||||||||||||||||||||||||||||    
T  44015494 tatctctctcttaatcaatctttatctctcatctaaataatttattttaatcattc 44015439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 30643670 - 30643619
Alignment:
Q  98 tctctcttaacaactcattatctatcatctaaataatttattttaatcattc 149  Q
    ||||||||||  | ||||| ||| ||||||||||||||||||||||||||||    
T  30643670 tctctcttaatcaatcattctctctcatctaaataatttattttaatcattc 30643619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 40202326 - 40202275
Alignment:
Q  98 tctctcttaacaactcattatctatcatctaaataatttattttaatcattc 149  Q
    ||||| ||||| ||||||| ||| ||||||||||||||||||||||| ||||    
T  40202326 tctcttttaaccactcattctctttcatctaaataatttattttaataattc 40202275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 29693182 - 29693253
Alignment:
Q  71 gatgtcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaat 144  Q
    |||||||| ||||  ||||||||||||||  ||||||||||  ||||||| | || ||||||||||||||||||    
T  29693182 gatgtcattggtacttttgtgtctatctc--tcttaacaacatattatctcttatttaaataatttattttaat 29693253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 53176866 - 53176903
Alignment:
Q  112 tcattatctatcatctaaataatttattttaatcattc 149  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  53176866 tcattttctctcatctaaataatttattttaatcattc 53176903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 20312 - 20349
Alignment:
Q  112 tcattatctatcatctaaataatttattttaatcattc 149  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  20312 tcattatctctcatctaaataatttattttaatcattc 20349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 149
Target Start/End: Original strand, 31606 - 31635
Alignment:
Q  120 tatcatctaaataatttattttaatcattc 149  Q
    ||||||||||||||||||||||||||||||    
T  31606 tatcatctaaataatttattttaatcattc 31635  T

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