View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6119_low_2 (Length: 418)

Name: NF6119_low_2
Description: NF6119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6119_low_2
NF6119_low_2
[»] chr4 (3 HSPs)
chr4 (50-409)||(34621690-34622057)
chr4 (141-203)||(49219128-49219190)
chr4 (234-271)||(41162203-41162240)
[»] chr1 (3 HSPs)
chr1 (141-203)||(12564893-12564955)
chr1 (243-278)||(6933118-6933153)
chr1 (121-184)||(47020515-47020579)
[»] chr5 (4 HSPs)
chr5 (119-203)||(21768193-21768278)
chr5 (234-273)||(14257346-14257385)
chr5 (236-274)||(30845201-30845239)
chr5 (233-273)||(11095603-11095643)
[»] chr8 (2 HSPs)
chr8 (243-278)||(31167861-31167896)
chr8 (235-280)||(7026605-7026650)
[»] chr7 (3 HSPs)
chr7 (243-278)||(31691271-31691306)
chr7 (141-203)||(10190784-10190846)
chr7 (141-201)||(44151499-44151559)
[»] chr2 (1 HSPs)
chr2 (243-278)||(6772696-6772731)
[»] chr6 (4 HSPs)
chr6 (232-273)||(30865355-30865396)
chr6 (167-203)||(2112189-2112225)
chr6 (119-202)||(3168257-3168341)
chr6 (151-203)||(28660789-28660841)
[»] scaffold0024 (1 HSPs)
scaffold0024 (167-203)||(27565-27601)
[»] chr3 (3 HSPs)
chr3 (234-278)||(2201000-2201044)
chr3 (243-275)||(4534500-4534532)
chr3 (147-203)||(47904088-47904144)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 50 - 409
Target Start/End: Complemental strand, 34622057 - 34621690
Alignment:
Q  50 attctttttctcttt-ggtaaatgtttacaaatgttgataggagtctatgactt-------------tatttgagtttgtttacttatgacatgtccatg 135  Q
    |||| |||||||||| |||||||||||||||||| ||| |||||||||||||||             |||||||||||||||||||||||||||||||||    
T  34622057 attcgttttctcttttggtaaatgtttacaaatgctgacaggagtctatgacttgtttggattgatttatttgagtttgtttacttatgacatgtccatg 34621958  T
Q  136 gactgtttcaacttatttccgtaagctcgtaaagataggttatgaaaacaatttatagtttatatgaatgtagcttatagcttttgttgtagaaataact 235  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34621957 gactgtttcaacttatttccgtaagctcgtaaagatacgttatgaaaacaatttatagtttatatgactgtagcttatagcttttgttgtagaaataact 34621858  T
Q  236 tatgttgtaagtgcttagttaagttgtttatccaaacagagtcgtgttggagataaaagatactcacagtttt-tacatcattggatataaatataaaat 334  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34621857 tatgttgtaagtgtttagttaagttgtttatccaaacagagtcatgttggagataaaagatactcacagttttatacatcattggatataaatataaaat 34621758  T
Q  335 gtacacaattttcacaccatagtgaatagtgaattttaacatgagaggtgtggatcctggttggaagagtataat 409  Q
    ||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34621757 gtacacaattttcacacc-------atagtgaattttaacatgagaggtgtggatcctggttggaagagtataat 34621690  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 49219190 - 49219128
Alignment:
Q  141 tttcaacttatttccgtaagctcgtaaagataggttatgaaaacaatttatagtttatatgaa 203  Q
    ||||| ||||||||| ||| ||| | ||||||| |||||||||||| |||||| |||||||||    
T  49219190 tttcagcttatttccataatctctttaagatagtttatgaaaacaacttatagcttatatgaa 49219128  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 41162203 - 41162240
Alignment:
Q  234 cttatgttgtaagtgcttagttaagttgtttatccaaa 271  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  41162203 cttatgttataagtgcttaattaagttgtttatccaaa 41162240  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 12564893 - 12564955
Alignment:
Q  141 tttcaacttatttccgtaagctcgtaaagataggttatgaaaacaatttatagtttatatgaa 203  Q
    ||||| ||||||||||||||| |  |||||||| |||||||||||| |||||| |||||||||    
T  12564893 tttcagcttatttccgtaagcactaaaagatagcttatgaaaacaacttatagcttatatgaa 12564955  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 278
Target Start/End: Original strand, 6933118 - 6933153
Alignment:
Q  243 taagtgcttagttaagttgtttatccaaacagagtc 278  Q
    |||||||||| |||||||||||||||||||||||||    
T  6933118 taagtgcttaattaagttgtttatccaaacagagtc 6933153  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 47020579 - 47020515
Alignment:
Q  121 tatgacatgtccatggactgttt-caacttatttccgtaagctcgtaaagataggttatgaaaac 184  Q
    ||||||||||||||   |||||| ||||||||||||||||||||   ||||||| ||||||||||    
T  47020579 tatgacatgtccataacctgtttacaacttatttccgtaagctctctaagatagcttatgaaaac 47020515  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 203
Target Start/End: Original strand, 21768193 - 21768278
Alignment:
Q  119 cttatgacatgtccatggactgttt-caacttatttccgtaagctcgtaaagataggttatgaaaacaatttatagtttatatgaa 203  Q
    ||||||||||||||||   |||||| |||||||||| ||||||||| | ||||||  |||||||||||  ||| ||||||||||||    
T  21768193 cttatgacatgtccatacgctgttttcaacttattttcgtaagctcttcaagataacttatgaaaacagcttaaagtttatatgaa 21768278  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 234 - 273
Target Start/End: Complemental strand, 14257385 - 14257346
Alignment:
Q  234 cttatgttgtaagtgcttagttaagttgtttatccaaaca 273  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  14257385 cttatgttataagtgcttaattaagttgtttatccaaaca 14257346  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 274
Target Start/End: Complemental strand, 30845239 - 30845201
Alignment:
Q  236 tatgttgtaagtgcttagttaagttgtttatccaaacag 274  Q
    |||||| |||||||||| |||||||||||||||||||||    
T  30845239 tatgttataagtgcttaattaagttgtttatccaaacag 30845201  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 11095603 - 11095643
Alignment:
Q  233 acttatgttgtaagtgcttagttaagttgtttatccaaaca 273  Q
    |||||| | ||||||| ||||||||||||||||||||||||    
T  11095603 acttatatggtaagtgtttagttaagttgtttatccaaaca 11095643  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 278
Target Start/End: Complemental strand, 31167896 - 31167861
Alignment:
Q  243 taagtgcttagttaagttgtttatccaaacagagtc 278  Q
    |||||||||| |||||||||||||||||||||||||    
T  31167896 taagtgcttaattaagttgtttatccaaacagagtc 31167861  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 7026650 - 7026605
Alignment:
Q  235 ttatgttgtaagtgcttagttaagttgtttatccaaacagagtcgt 280  Q
    ||||| ||||| |||||| ||||||||||||||||||||| |||||    
T  7026650 ttatgctgtaaatgcttaattaagttgtttatccaaacagggtcgt 7026605  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 278
Target Start/End: Original strand, 31691271 - 31691306
Alignment:
Q  243 taagtgcttagttaagttgtttatccaaacagagtc 278  Q
    |||||||||| |||||||||||||||||||||||||    
T  31691271 taagtgcttaattaagttgtttatccaaacagagtc 31691306  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 10190846 - 10190784
Alignment:
Q  141 tttcaacttatttccgtaagctcgtaaagataggttatgaaaacaatttatagtttatatgaa 203  Q
    ||||||| ||||||| ||||||  |||  |||| |||||||||||||||| ||||||||||||    
T  10190846 tttcaacgtatttccataagcttttaagaatagtttatgaaaacaatttacagtttatatgaa 10190784  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 44151499 - 44151559
Alignment:
Q  141 tttcaacttatttccgtaagctcgtaaagataggttatgaaaacaatttatagtttatatg 201  Q
    ||||| ||||||||| ||||||  | ||||||| |||||||||||| |||||| |||||||    
T  44151499 tttcagcttatttccataagcttttcaagatagtttatgaaaacaacttatagcttatatg 44151559  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 278
Target Start/End: Original strand, 6772696 - 6772731
Alignment:
Q  243 taagtgcttagttaagttgtttatccaaacagagtc 278  Q
    |||||||||| |||||||||||||||||||||||||    
T  6772696 taagtgcttaattaagttgtttatccaaacagagtc 6772731  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 30865396 - 30865355
Alignment:
Q  232 aacttatgttgtaagtgcttagttaagttgtttatccaaaca 273  Q
    |||||||||| ||| |||||| ||||||||||||||||||||    
T  30865396 aacttatgttataaatgcttaattaagttgtttatccaaaca 30865355  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 2112225 - 2112189
Alignment:
Q  167 aagataggttatgaaaacaatttatagtttatatgaa 203  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  2112225 aagatagtttatgaaaacaacttatagtttatatgaa 2112189  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 3168257 - 3168341
Alignment:
Q  119 cttatgacatgtccatggactg-tttcaacttatttccgtaagctcgtaaagataggttatgaaaacaatttatagtttatatga 202  Q
    |||||||||||||||| | ||| ||||| ||||||||| |||||||   | ||||| ||| ||||||| ||||||| ||||||||    
T  3168257 cttatgacatgtccatcggctgttttcagcttatttccttaagctctccaggatagcttaagaaaacagtttatagcttatatga 3168341  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 28660789 - 28660841
Alignment:
Q  151 tttccgtaagctcgtaaagataggttatgaaaacaatttatagtttatatgaa 203  Q
    ||||| ||||||  ||| ||||| |||||||||||||||||| ||||||||||    
T  28660789 tttccataagcttttaaggatagtttatgaaaacaatttataatttatatgaa 28660841  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 27601 - 27565
Alignment:
Q  167 aagataggttatgaaaacaatttatagtttatatgaa 203  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  27601 aagatagtttatgaaaacaacttatagtttatatgaa 27565  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 2201044 - 2201000
Alignment:
Q  234 cttatgttgtaagtgcttagttaagttgtttatccaaacagagtc 278  Q
    |||||| | |||| ||||||||||||||||||||| |||||||||    
T  2201044 cttatgctataagcgcttagttaagttgtttatcctaacagagtc 2201000  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 275
Target Start/End: Original strand, 4534500 - 4534532
Alignment:
Q  243 taagtgcttagttaagttgtttatccaaacaga 275  Q
    |||||||||| ||||||||||||||||||||||    
T  4534500 taagtgcttaattaagttgtttatccaaacaga 4534532  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 47904088 - 47904144
Alignment:
Q  147 cttatttccgtaagctcgtaaagataggttatgaaaacaatttatagtttatatgaa 203  Q
    ||||||||||||||||| | | ||||| |||||||||| | |||||| |||||||||    
T  47904088 cttatttccgtaagctcttcacgatagcttatgaaaaccacttatagattatatgaa 47904144  T

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