View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6119_low_4 (Length: 338)
Name: NF6119_low_4
Description: NF6119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6119_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 46082909 - 46082599
Alignment:
| Q |
20 |
agtgtaataacgtcttctgtatattgttgttagaaagaaattgagggtcttaagtttaatctctcaaatatttcatccacatctggcgacggtgctcaaa |
119 |
Q |
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| T |
46082909 |
agtgtaataacgtcttctgtatattgttgttagaaagaaattgagggtcttaagtttaatctctcaaatatttcatccacatctggtgacggtgctcaaa |
46082810 |
T |
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| Q |
120 |
agttaaagcaagactaccttcaaaagttgaattctcttgaagcacaggtgatccgttatttggaatgtgttagcgctaaatggccactcagtgtgataaa |
219 |
Q |
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| T |
46082809 |
agttaaagcaagactaccttcaaaagttgaattctcttgaaggacaggtgatccgttatttggaatatgttagcgctaaatggccactcagtgtgataaa |
46082710 |
T |
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| Q |
220 |
ctgattatttccttttcaggtatctgaactgaagagaaaacaagaagctcaggctcaactcttgaaacaaaaacagaagagtgatgaggctacaaaacaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46082709 |
ctgattatttccttttcaggtatctgaactgaagagaaaacaagaagctcaggctcaactcttgaaacaaaaacagaagagtgatgaggctacaaaacaa |
46082610 |
T |
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| Q |
320 |
cttcatgatga |
330 |
Q |
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||||||||||| |
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| T |
46082609 |
cttcatgatga |
46082599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 315
Target Start/End: Original strand, 27959547 - 27959638
Alignment:
| Q |
224 |
ttatttccttttcaggtatctgaactgaagagaaaacaagaagctcaggctcaactcttgaaacaaaaacagaagagtgatgaggctacaaa |
315 |
Q |
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|||||| |||| ||||| ||||| ||||||| |||||||| ||||||||||| || |||| ||||||||||| ||||||||||| |||| |
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| T |
27959547 |
ttatttactttccaggtctctgagctgaagaagaaacaagatgctcaggctcatcttttgaggcaaaaacagaaaggtgatgaggctgcaaa |
27959638 |
T |
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