View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6119_low_5 (Length: 337)
Name: NF6119_low_5
Description: NF6119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6119_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 122 - 332
Target Start/End: Original strand, 2201637 - 2201847
Alignment:
| Q |
122 |
ccttcagattaaaaggaatggctgagattaaattatcacttaagtgagtcatgtgacaatgtcatgtgccaattctcattccaaaacaattctctctcct |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2201637 |
ccttcagattaaaaggaatggctgagattaaattatcacttaagtgagtcatgtgacaatgtcatgtgccaattctcattccaaaacaattctctctcct |
2201736 |
T |
|
| Q |
222 |
ccacaatcagaaataactcccgccctaaatcttccccttcttctcactgtgtctctttgtattctacatctttttaccttgtctctctgtcttccattgt |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2201737 |
ccacaatcagaaataactcccgccctaaatcttccccttcttctcactgtgtctctttgtattctacatctttttaccttgtctctctgccttccattgt |
2201836 |
T |
|
| Q |
322 |
tttcatctcac |
332 |
Q |
| |
|
| ||||||||| |
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|
| T |
2201837 |
tctcatctcac |
2201847 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 2206255 - 2206198
Alignment:
| Q |
122 |
ccttcagattaaaaggaatggctgagattaaattatcacttaagtgagtcatgtgaca |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2206255 |
ccttcagattaaaaggaatggctgagattaaattatcacttaagtgagtcatgtgaca |
2206198 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 122 - 332
Target Start/End: Original strand, 18858721 - 18858930
Alignment:
| Q |
122 |
ccttcagattaaaaggaatggctgagattaaattatcacttaagtgagtcatgtgacaatgtcatgtgccaattctcattccaaaacaattctctctcct |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
18858721 |
ccttcagattaaaaggaatggctgagattaaattatcacttaagtcagtcatgtgacaatgtcatgtgcca-ttctcattccaaaacaattctctctcct |
18858819 |
T |
|
| Q |
222 |
ccacaatcagaaataactcccgccctaaatcttccccttcttctcactgtgtctctttgtattctacatctttttaccttgtctctctgtcttccattgt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||| ||| |
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| T |
18858820 |
ccacaatcagaaataactcccgccctaaatcttctccttcttctcaccgtgtctctttgtattctacatcttcttaccttgtctctctgccttccactgt |
18858919 |
T |
|
| Q |
322 |
tttcatctcac |
332 |
Q |
| |
|
| ||||||||| |
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|
| T |
18858920 |
tctcatctcac |
18858930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 138 - 332
Target Start/End: Original strand, 33111336 - 33111538
Alignment:
| Q |
138 |
aatggctgagattaaattatcacttaagtgagtcatgtgaca-------atgtcatgtgccaattctcattccaaaacaa--ttctctctcctccacaat |
228 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| || ||| |||||||||||||||||| |
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|
| T |
33111336 |
aatggttgagattaaattatcacttaagtgagtcatgtgacatatgacaatgtcatgtgcca-ttctcattcaaattcaactttctctctcctccacaat |
33111434 |
T |
|
| Q |
229 |
cagaaataactcccgccctaaatcttccccttcttctcactgtgtctctttgtattctacatctttttaccttgtctctctgtcttccattgttttcatc |
328 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||| | |||||||||||||||||||||| ||||||| |||||||| |||||| |||| | ||| |
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|
| T |
33111435 |
cagaaataactcccgccctaattcttctccttcttctcaccgcgtctctttgtattctacatcttcttaccttatctctctgccttccactgttcttatc |
33111534 |
T |
|
| Q |
329 |
tcac |
332 |
Q |
| |
|
|||| |
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|
| T |
33111535 |
tcac |
33111538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 18861772 - 18861718
Alignment:
| Q |
122 |
ccttcagattaaaaggaatggctgagattaaattatcacttaagtgagtcatgtg |
176 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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|
| T |
18861772 |
ccttcagattaaaaggaatggctaagattaaattatcacttaagtcagtcatgtg |
18861718 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 176
Target Start/End: Original strand, 36258307 - 36258358
Alignment:
| Q |
125 |
tcagattaaaaggaatggctgagattaaattatcacttaagtgagtcatgtg |
176 |
Q |
| |
|
|||||||||||| ||||| | |||||||| |||||||||||||| ||||||| |
|
|
| T |
36258307 |
tcagattaaaagtaatgggtaagattaaaatatcacttaagtgactcatgtg |
36258358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 122 - 309
Target Start/End: Complemental strand, 15899340 - 15899154
Alignment:
| Q |
122 |
ccttcagattaaaaggaatggctgagattaaattatcacttaagtgagtcatgtgacaatgtcatgtgccaattctcattccaaaacaattctctctcct |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
15899340 |
ccttcagattaaaaggaatggctgagattaaattatcacttaagtgagtcatgtgacaatgtcatgtgcca-ttctcattccaaaacaattctctctcct |
15899242 |
T |
|
| Q |
222 |
ccacaatcagaaataactcccgccctaaatcttccccttcttctcactgtgtctctttgtattctacatctttttaccttgtctctct |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| || ||||||||||||||| |
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|
| T |
15899241 |
ccacaatcagaaataactcccgccctaaatcttctccttcttctcaacgtgtctctttgtattctacatattcttaccttgtctctct |
15899154 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 122 - 332
Target Start/End: Complemental strand, 39011573 - 39011364
Alignment:
| Q |
122 |
ccttcagattaaaaggaatggctgagattaaattatcacttaagtgagtcatgtgacaatgtcatgtgccaattctcattccaaaacaattctctctcct |
221 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||| |||||||||||| |||||||| |
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|
| T |
39011573 |
ccttcaaattaaaaggaatggctgagattaaattatcacttaagtgagtcgtgtgacaatgtcatgtgtca-ttctcaatccaaaacaattatctctcct |
39011475 |
T |
|
| Q |
222 |
ccacaatcagaaataactcccgccctaaatcttccccttcttctcactgtgtctctttgtattctacatctttttaccttgtctctctgtcttccattgt |
321 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| || ||||||||||||| |||||| ||| |
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|
| T |
39011474 |
ccataatcagaaataactcccgccctaaatcttctccttcttctcaccctgtctctttgtattctacatcttcttcccttgtctctctgccttccactgt |
39011375 |
T |
|
| Q |
322 |
tttcatctcac |
332 |
Q |
| |
|
| ||||||||| |
|
|
| T |
39011374 |
tctcatctcac |
39011364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 15894735 - 15894789
Alignment:
| Q |
122 |
ccttcagattaaaaggaatggctgagattaaattatcacttaagtgagtcatgtg |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15894735 |
ccttcagattaaaaggaatggctgagattaaattatcacttaagttagtcatgtg |
15894789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 39011629 - 39011678
Alignment:
| Q |
122 |
ccttcagattaaaaggaatggctgagattaaattatcacttaagtgagtc |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39011629 |
ccttcagattaaaaggaatggctgagattaaattatcacttaagtgagtc |
39011678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 31238921 - 31238854
Alignment:
| Q |
125 |
tcagattaaaaggaatggctgagattaaattatcacttaagtgagtcatgtgacaatgtcatgtgcca |
192 |
Q |
| |
|
||||||||||| || || |||||||||| ||||||||||||||||||||| | |||||||||||| |
|
|
| T |
31238921 |
tcagattaaaataaagggatgagattaaaacatcacttaagtgagtcatgtgctattgtcatgtgcca |
31238854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 18097454 - 18097405
Alignment:
| Q |
127 |
agattaaaaggaatggctgagattaaattatcacttaagtgagtcatgtg |
176 |
Q |
| |
|
||||||||||||||| |||||||||| || |||||||||||||||||| |
|
|
| T |
18097454 |
agattaaaaggaatgattgagattaaaacatgacttaagtgagtcatgtg |
18097405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 122 - 332
Target Start/End: Original strand, 24316907 - 24317118
Alignment:
| Q |
122 |
ccttcagattaaaaggaatggctgagattaaattatcacttaagtgagtcatgtgacaatgtcatgtgccaattctcattccaaaacaa--ttctctctc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| ||||||||| |
|
|
| T |
24316907 |
ccttcagattaaaaggaatggctgagattaaattatcacttaagtgagtcatgtgataatgtcatgtgcca-ttctcattccaattcaactttctctctc |
24317005 |
T |
|
| Q |
220 |
ctccacaatcagaaataactcccgccctaaatcttccccttcttctcactgtgtctctttgtattctacatctttttaccttgtctctctgtcttccatt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||| ||||||||| | |||||| | |
|
|
| T |
24317006 |
ctccacaatcagaaataactcccgccctaaatcttctccttcttctcaccgtgtctctttgtattctacatcttcttacattgtctctcggccttccact |
24317105 |
T |
|
| Q |
320 |
gttttcatctcac |
332 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
24317106 |
gttctcatctcac |
24317118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 24321127 - 24321070
Alignment:
| Q |
122 |
ccttcagattaaaaggaatggctgagattaaattatcacttaagtgagtcatgtgaca |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24321127 |
ccttcagattaaaaggaatggctgagattaaattatcacttaagtgagtcatgtgaca |
24321070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 28844862 - 28844787
Alignment:
| Q |
125 |
tcagattaaaaggaatggctgagattaaattatcacttaagtgagtcatgtgacaatgtcatgtgccaattctcatt |
201 |
Q |
| |
|
||||||||||| || || |||||||||| ||||||||| ||||||||||| | ||||||||||| ||||||||| |
|
|
| T |
28844862 |
tcagattaaaataaagggttgagattaaaacatcacttaaatgagtcatgtgctattgtcatgtgcc-attctcatt |
28844787 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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