View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6119_low_7 (Length: 201)

Name: NF6119_low_7

Description: NF6119

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF6119_low_7

[»] chr6 (2 HSPs)

Target: chr6 (Bit Score: 114; Significance: 5e-58; HSPs: 2)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 114; E-Value: 5e-58

Query Start/End: Original strand, 14 - 201

Target Start/End: Complemental strand, 16660207 - 16660019

Alignment:

Q	14	gaatctttgttttctcatgtttg-ttttttctgttgttaattttagtcgattagtttaactcttcaaaacaaaaatattaatgtgc-agagttcttgcta	111	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	16660207	gaatttttgttttctcatgttttattttttctgttgttaattttggtcgattggtttgactcttcaaaacaaaaatactgatgtggtagagttcttgcta	16660108	T

Q	112	gctacatttacagcaaagtagaaaagtctttgatttaacaactaaaccaaaaaccatgcataaacacaggagttgtaatgaaaacataac	201	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\| \|\|\|\|
T	16660107	gctacatttacaacaaagtagaaaagtctttgatttaacaattaaacc-aaaaccatgcataaacacaggagctgttatgaaaacttaac	16660019	T

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Target: chr6; HSP #2

Raw Score: 86; E-Value: 3e-41

Query Start/End: Original strand, 73 - 201

Target Start/End: Original strand, 17706946 - 17707074

Alignment:

Q	73	tcttcaaaacaaaaatattaatgtg-cagagttcttgctagctacatttacagcaaagtagaaaagtctttgatttaacaactaaaccaaaaaccatgca	171	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|
T	17706946	tcttcaaaacaaaaatattaatgtggcagagttcttgctagctacatttacaactgagtagaaaagtctttgatttaacaattaaacc-aaaagcatgca	17707044	T

Q	172	taaacacaggagttgtaatgaaaacataac	201	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	17707045	taaacacaggagctgtaatgaaaacttaac	17707074	T

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