View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6120_high_18 (Length: 287)
Name: NF6120_high_18
Description: NF6120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6120_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 24 - 233
Target Start/End: Complemental strand, 4417411 - 4417202
Alignment:
| Q |
24 |
cgtattaggagcaaattttataaatatgaattagatccaaccgaagttctaagatgttattagcaaggccattccaatttaatttggaggctccgttcaa |
123 |
Q |
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| T |
4417411 |
cgtattaggagcaaattttataaatatgaattagatccaatcgaaattctaagatgttattagcaaggccatcccaatttaatttggaggctccgttcaa |
4417312 |
T |
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| Q |
124 |
atattaaaaattaaaggaggcatcctctattacgggagttggttagtcgcggttgtcaaattgttatcttt---tattatatataactaataatatgttt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
4417311 |
atattaaaaattaaaggaggcatcctctattacgggagttagttagtcgcgcttgtcaaattgttatcttttactattatatataac---taatatgttt |
4417215 |
T |
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| Q |
221 |
gggtcttgtagtg |
233 |
Q |
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||||||||||||| |
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| T |
4417214 |
gggtcttgtagtg |
4417202 |
T |
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