View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6120_high_23 (Length: 250)
Name: NF6120_high_23
Description: NF6120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6120_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 4915872 - 4916099
Alignment:
| Q |
1 |
tatacctttcattgatcatgattatttcggtgaggaaatatataattacaaagtggagctcaagttgttaggagtgatagttgacttcaatggaaattac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4915872 |
tatacctttcattgatcatgattatttcggtgaggaaatatataattacaaagtggagctcaagttgttaggagtgatagttgacttcaatggaaattac |
4915971 |
T |
|
| Q |
101 |
caagttgtcacagagcatttaaaactgccctcaaatttggcttctttgacggctgaggctattcttttgataatggaatgcatcaaacattcaaatgtcc |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4915972 |
caagttgtcatagagcatttaaaactgccctcaaatttggcttctttgacggctgaggctattcttttgataatggaatgcatcaaacattcaaatgtcc |
4916071 |
T |
|
| Q |
201 |
ctattgaagtcttaaatttgctaagggg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
4916072 |
ctattgaagtcttaaatttgctaagggg |
4916099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 5 - 185
Target Start/End: Original strand, 3011816 - 3011996
Alignment:
| Q |
5 |
cctttcattgatcatgattatttcggtgaggaaatatataattacaaagtggagctcaagttgttaggagtgatagttgacttcaatggaaattaccaag |
104 |
Q |
| |
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|||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
3011816 |
cctttcattgatcatgcttattttggtgaggaaatatataattacaaagaagagctcaagttgctaggagtgatagttgacttgaatggaaattaccaag |
3011915 |
T |
|
| Q |
105 |
ttgtcacagagcatttaaaactgccctcaaatttggcttctttgacggctgaggctattcttttgataatggaatgcatca |
185 |
Q |
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| T |
3011916 |
ttgtcattgagcatttaaaaccactctcaaatttggcctctttgacagctgaggctgttcttttgataatggagtgcatca |
3011996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 2947605 - 2947388
Alignment:
| Q |
1 |
tatacctttcattgatcatgattatttcggtgaggaaatatataattacaaagtggagctcaagttgttaggagtgatagttgacttcaatggaaattac |
100 |
Q |
| |
|
|||||| ||||||| || || ||||| ||||||||||||||||| ||||||| |||||| |||||| | |||||||||||||| || | |||||||||| |
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| T |
2947605 |
tataccattcattggtcgtgtttattgtggtgaggaaatatataactacaaagaggagcttaagttgctgggagtgatagttgatttaagtggaaattac |
2947506 |
T |
|
| Q |
101 |
caagttgtcacagagcatttaaaactgccctcaaatttggcttctttgacggctgaggctattcttttgataatggaatgcatcaaacattcaaatgtcc |
200 |
Q |
| |
|
|||||||| ||| | ||||||||| ||||||||||| || |||||||| ||||||||| |||||||||||||||||||||||||| | || ||||||| |
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| T |
2947505 |
caagttgttacacaacatttaaaatcaccctcaaatttagcctctttgacagctgaggctgttcttttgataatggaatgcatcaaatactcgaatgtcc |
2947406 |
T |
|
| Q |
201 |
ctattgaagtcttaaatt |
218 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
2947405 |
ctattgaagtcttaaatt |
2947388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 5 - 185
Target Start/End: Complemental strand, 2930954 - 2930774
Alignment:
| Q |
5 |
cctttcattgatcatgattatttcggtgaggaaatatataattacaaagtggagctcaagttgttaggagtgatagttgacttcaatggaaattaccaag |
104 |
Q |
| |
|
||||||||||||| || |||||| ||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||| | |||||||||||||| |
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| T |
2930954 |
cctttcattgatcgtgcttattttggtgaacaaatatataattacaaagaggagctcaagttgctaggagtgatagttgacttaactggaaattaccaag |
2930855 |
T |
|
| Q |
105 |
ttgtcacagagcatttaaaactgccctcaaatttggcttctttgacggctgaggctattcttttgataatggaatgcatca |
185 |
Q |
| |
|
| |||| |||||||| || ||| |||||||||||||| ||||| ||||||||| |||||||||||||||||||||||| |
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|
| T |
2930854 |
tcgtcattgagcatttgaagtcgccttcaaatttggcttcattgaccgctgaggctgttcttttgataatggaatgcatca |
2930774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 187
Target Start/End: Complemental strand, 37796455 - 37796276
Alignment:
| Q |
5 |
cctttcattgatcatgattatttcggtgaggaaatatataattacaaagtggagctcaagttgttaggagtgatagttgacttcaatggaaattaccaag |
104 |
Q |
| |
|
||||| |||||||| | ||| || |||||||||||||||| ||||||| |||||| |||||||| |||||| |||||| ||| ||| ||||||||||| |
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| T |
37796455 |
ccttttattgatcaagcttactttggtgaggaaatatatagctacaaagaggagctgaagttgttgggagtggtagttggctttaatagaaattaccaaa |
37796356 |
T |
|
| Q |
105 |
ttgtcacagagcatttaaaactgccctcaaatttggcttctttgacggctgaggctattcttttgataatggaatgcatcaaa |
187 |
Q |
| |
|
|||| | |||| ||| || ||||||||||||| |||||||| ||||||||| |||||||||||||| ||||||||||| |
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| T |
37796355 |
ttgttatcaagcacttatcac---cctcaaatttggcctctttgacagctgaggctgttcttttgataatgcaatgcatcaaa |
37796276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 172
Target Start/End: Complemental strand, 2921553 - 2921409
Alignment:
| Q |
29 |
ggtgaggaaatatataattacaaagtggagctcaagttgttaggagtgatagttgacttcaatggaaattaccaagttg-tcacagagcatttaaaactg |
127 |
Q |
| |
|
||||| ||||| ||||||||||||| ||||||||||||| ||||||||||||||| ||| ||||||||||||| ||| | | |||||||||||| |
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| T |
2921553 |
ggtgaagaaatttataattacaaagaggagctcaagttgctaggagtgatagttggcttatctggaaattaccaaattgtttatcgagcatttaaaatca |
2921454 |
T |
|
| Q |
128 |
ccctcaaatttggcttctttgacggctgaggctattcttttgata |
172 |
Q |
| |
|
|||||||||||| |||||||| || |||||| ||||||||||| |
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| T |
2921453 |
tgctcaaatttggcctctttgacagccgaggctgttcttttgata |
2921409 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 1506132 - 1506347
Alignment:
| Q |
9 |
tcattgatcatgattatttcggtgaggaaatatataattacaaagtggagctcaagttgttaggagtgatagttgacttcaatggaaattaccaagttgt |
108 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| |||||||||||| ||||||||||||| | |||||||||| |||||| | || ||||||||||||||| |
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| T |
1506132 |
tcattgataatgattattatggtgaggaaatacataattacaaagaggagctcaagttgctgggagtgatagctgacttaagtgaaaattaccaagttgt |
1506231 |
T |
|
| Q |
109 |
cacagagcatttaaaactgccctcaaatttggcttctttgacggctgaggctattcttttgataatggaatgcatcaaacattcaaatgtccctattgaa |
208 |
Q |
| |
|
|| || |||||||| || |||| ||| | | |||||||| ||| ||| |||||||||||||||||||||||||| | || ||| ||||||| || |
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|
| T |
1506232 |
cattgaacatttaaagtcaccatcaagattgtcctgtttgacggttgaagctgttcttttgataatggaatgcatcaaatactcgaattcccctattaaa |
1506331 |
T |
|
| Q |
209 |
gtcttaaatttgctaa |
224 |
Q |
| |
|
|||||| || ||||| |
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|
| T |
1506332 |
ctcttaagttcgctaa |
1506347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 187
Target Start/End: Complemental strand, 28025436 - 28025271
Alignment:
| Q |
22 |
ttatttcggtgaggaaatatataattacaaagtggagctcaagttgttaggagtgatagttgacttcaatggaaattaccaagttgtcacagagcattta |
121 |
Q |
| |
|
|||||| || |||||||||||| | ||||||| |||||| |||||||| ||||||||||||| | | | ||||||||||||| |||| | ||||||||| |
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|
| T |
28025436 |
ttattttggcgaggaaatatatgactacaaagaggagctgaagttgttgggagtgatagttggcataagtggaaattaccaaattgttatcgagcattta |
28025337 |
T |
|
| Q |
122 |
aaactgccctcaaatttggcttctttgacggctgaggctattcttttgataatggaatgcatcaaa |
187 |
Q |
| |
|
||| |||||| ||||||| |||||||| ||||||||| ||||| || | ||| ||||||||||| |
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|
| T |
28025336 |
aaatcaccctcatatttggcctctttgaccgctgaggctgttcttctgctgatgaaatgcatcaaa |
28025271 |
T |
|
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