View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6120_high_30 (Length: 235)
Name: NF6120_high_30
Description: NF6120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6120_high_30 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 35942878 - 35943110
Alignment:
| Q |
1 |
ctccacatcccaacctcaaatcagccattacccccgttcccaaaaaacacaaaggtcgtggtttccatatgattatcatttttattaattgtatggtggt |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
35942878 |
ctccacatcccaatctcaaatcagccattacccccgttcacaaaaaacacaaaggtcgcggtttccatatgattatcatttttatttattgtgtggtggt |
35942977 |
T |
|
| Q |
101 |
gtaattttctggctttgtttatgtgttatccataaaattaagttgtttnnnnnnntatgattttaatcatatgctgttggaannnnnnnnnngttctttc |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||| ||||| ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
35942978 |
gtaattttctggctttgtttatgttctatccataatattaagctgtttaacaaaaaatgattttaatcatatgttgttggaa--ttttttttgttctttc |
35943075 |
T |
|
| Q |
201 |
agatctagaatcatatgctgctggaaaaaattaag |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
35943076 |
agatctagaatcatatgctgctggaaaaaattaag |
35943110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1976987 - 1977052
Alignment:
| Q |
1 |
ctccacatcccaacctcaaatcagccattacccccgttcccaaaaaacacaaaggtcgtggtttcc |
66 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||| |||||||||||||| ||||||||| ||||||| |
|
|
| T |
1976987 |
ctccacatcccaaactcaaatccgccatcacctccgttcccaaaaaaaccaaaggtcgcggtttcc |
1977052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University