View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6120_high_5 (Length: 425)
Name: NF6120_high_5
Description: NF6120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6120_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 72 - 411
Target Start/End: Original strand, 37272589 - 37272928
Alignment:
| Q |
72 |
gtttcactgtctcattctgttgatttggttaagagcaggctgcaaaatattataaagaacccaaagaatagctggtgctacaacaaacaacagaagctga |
171 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
37272589 |
gtttcactgtctcattctgttgatttggttaagagcaggctgcaaaatattataaagaacccaaagaatagctggtgttaccacaaacaacagaagctga |
37272688 |
T |
|
| Q |
172 |
cccctgttatcactaccagcagcttcagcaattgcagccatttcactagcaattgcatcttgtgttgatacaaaccctgaagctgctaacccacccccaa |
271 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37272689 |
cccctgttatcactaccagcagcttcagcaattgcagtcatttcactagcaattgcatcttgtgttgatacaaaccctgaagctgctaacccacccccaa |
37272788 |
T |
|
| Q |
272 |
gacctaaaccaattataactcctttatcgttacgcatacggttgatttggttaagtgctggttgaagaatgttgtacagaacccaagcaatggctggaat |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37272789 |
gacctaaaccaattataactcctttatcgttacgcatacggttgatttggttaagtgctggttgaagaatgttgtacagaacccaagctatggctggaat |
37272888 |
T |
|
| Q |
372 |
taatggtaacaaaagtgctaaaccacggttgtctgatgat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
37272889 |
taatggtaacaaaagtgctaaaccacggttgtctgatgat |
37272928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 72 - 176
Target Start/End: Original strand, 37268551 - 37268655
Alignment:
| Q |
72 |
gtttcactgtctcattctgttgatttggttaagagcaggctgcaaaatattataaagaacccaaagaatagctggtgctacaacaaacaacagaagctga |
171 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| |
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| T |
37268551 |
gtttcaccgtctcattctgttgatttggttaagagcaggctgcaaaatattataaagaacccaaagaatagctggtgcaaccacaaataacagaagctga |
37268650 |
T |
|
| Q |
172 |
cccct |
176 |
Q |
| |
|
|||| |
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|
| T |
37268651 |
gccct |
37268655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 209 - 411
Target Start/End: Original strand, 20580779 - 20580981
Alignment:
| Q |
209 |
ccatttcactagcaattgcatcttgtgttgatacaaaccctgaagctgctaacccacccccaagacctaaaccaattataactcctttatcgttacgcat |
308 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |
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| T |
20580779 |
ccatttcactagccattgcatcttgtgttgacacaaaccctgaagctgctaacccaccaccaagacccaaaccaatgataactcctttatcgttacgcat |
20580878 |
T |
|
| Q |
309 |
acggttgatttggttaagtgctggttgaagaatgttgtacagaacccaagcaatggctggaattaatggtaacaaaagtgctaaaccacggttgtctgat |
408 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||| ||||||| |||| |||||||||||| |
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| T |
20580879 |
acggttgatttggttaagtgctggttgaagaatgttgaacagaaccgaagctatggctggaattaatggtaacagaagtgcttaaccgcggttgtctgat |
20580978 |
T |
|
| Q |
409 |
gat |
411 |
Q |
| |
|
||| |
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|
| T |
20580979 |
gat |
20580981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 81 - 194
Target Start/End: Original strand, 39016975 - 39017088
Alignment:
| Q |
81 |
tctcattctgttgatttggttaagagcaggctgcaaaatattataaagaacccaaagaatagctggtgctacaacaaacaacagaagctgacccctgtta |
180 |
Q |
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|||||| |||||||| ||||| |||||||||||||||||||| || || |||||||| ||||||||||| ||||||||||||||||| |||||||| |
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| T |
39016975 |
tctcatcctgttgatctggttgagagcaggctgcaaaatattgtacagcacccaaaggatagctggtgcaacaacaaacaacagaagtgttcccctgttg |
39017074 |
T |
|
| Q |
181 |
tcactaccagcagc |
194 |
Q |
| |
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||||| |||||||| |
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| T |
39017075 |
tcacttccagcagc |
39017088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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