View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6120_high_7 (Length: 419)
Name: NF6120_high_7
Description: NF6120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6120_high_7 |
 | |
|
| [»] scaffold0860 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 27830080 - 27829791
Alignment:
| Q |
19 |
aatttagatttatgaaagatctttttaatgttagcttcatcatttgcaagccacttgaatttagcctacaaacnnnnnnn-gtatcatgaagctatgtat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27830080 |
aatttagatttatgaaagatctttttaatgttagcttcatcatttgcaagccacttgaatttagcctacaaacaaaaaaaagtatcatgaagctatgtat |
27829981 |
T |
|
| Q |
118 |
ttgaaaaggcagatcaactctcaacctaagtaacaatgaagcttatttcatatcatataacgcaaataggttcaacgagcaacaatttcaatagaattaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27829980 |
ttgaaaaggcagatcaactctcaacctaagtaacaaagaagcttatttcatatcatataacgcaaataggttcaacgagcaacaatttcaatagaatcaa |
27829881 |
T |
|
| Q |
218 |
attgctatattttcctatttatgtaacttcctctgtttgtatatccactatccaaccatatactatcagatttattatgggtactaacac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27829880 |
attgctatattttcctatttatgtaacttcctctgtttgtatatccactatccaaccatatactatcagatttattatgggtactaacac |
27829791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 303 - 413
Target Start/End: Complemental strand, 27826781 - 27826671
Alignment:
| Q |
303 |
aacacaaaactgcatgactcaatctatagtatatcatatcacgatattcattcacaaagaaacaattgtttcaacctacttatgtaactatctgcatatt |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27826781 |
aacacaaaactgcatgactcaatctatagtatatcatatcacgatattcattcacaaagaaacaattgtttcaacctatttatgtaactatctgcatatt |
27826682 |
T |
|
| Q |
403 |
ccctatgctac |
413 |
Q |
| |
|
||||||||||| |
|
|
| T |
27826681 |
ccctatgctac |
27826671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0860 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0860
Description:
Target: scaffold0860; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 33 - 189
Target Start/End: Original strand, 2715 - 2873
Alignment:
| Q |
33 |
aaagatctttttaatgttagcttcatcatttgcaagccacttgaatttagcctacaaacnnnnnnngtatcatgaagctatgtatttgaaaaggcagatc |
132 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| | ||| |
|
|
| T |
2715 |
aaagctctttttaatgttagcttcatcatttgcaagccacttgaatttagcctacaaacaaaaaaa-tgtcatgaagctatgtatttgaaaaggtaaatc |
2813 |
T |
|
| Q |
133 |
aactctcaacctaagtaacaatgaagct---tatttcatatcatataacgcaaataggtt |
189 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
2814 |
aactttcaacctaagtaacaatgaagcttcatatttaatatcatataaatcaaataggtt |
2873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 33 - 189
Target Start/End: Original strand, 13533186 - 13533344
Alignment:
| Q |
33 |
aaagatctttttaatgttagcttcatcatttgcaagccacttgaatttagcctacaaacnnnnnnngtatcatgaagctatgtatttgaaaaggcagatc |
132 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| | ||| |
|
|
| T |
13533186 |
aaagctctttttaatgttagcttcatcatttgcaagccacttgaatttagcctacaaacaaaaaaa-tgtcatgaagctatgtatttgaaaaggtaaatc |
13533284 |
T |
|
| Q |
133 |
aactctcaacctaagtaacaatgaagct---tatttcatatcatataacgcaaataggtt |
189 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
13533285 |
aactttcaacctaagtaacaatgaagcttcatatttaatatcatataaatcaaataggtt |
13533344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 33 - 189
Target Start/End: Original strand, 12816328 - 12816486
Alignment:
| Q |
33 |
aaagatctttttaatgttagcttcatcatttgcaagccacttgaatttagcctacaaacnnnnnnngtatcatgaagctatgtatttgaaaaggcagatc |
132 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| | ||| |
|
|
| T |
12816328 |
aaagctctttttaatgttagcttcatcatttgcaagccacttgaatttagcctacaaacaaaaaaa-tatcatgaagctacgtatttgaaaaggtaaatc |
12816426 |
T |
|
| Q |
133 |
aactctcaacctaagtaacaatgaagct---tatttcatatcatataacgcaaataggtt |
189 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
12816427 |
aactttcaacctaagtaacaatgaagcttcatatttaatatcatataaatcaaataggtt |
12816486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 10300946 - 10301004
Alignment:
| Q |
33 |
aaagatctttttaatgttagcttcatcatttgcaagccacttgaatttagcctacaaac |
91 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10300946 |
aaagctctttttaatgttagcttcatcatttgcaagccacttgaatttagcctacaaac |
10301004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 372
Target Start/End: Original strand, 38964508 - 38964574
Alignment:
| Q |
306 |
acaaaactgcatgactcaatctatagtatatcatatcacgatattcattcacaaagaaacaattgtt |
372 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| ||||||| || ||||| |||| ||||||||||| |
|
|
| T |
38964508 |
acaaaaatgcatgactcaacctatagtatattatatcacaattttcatcagcaaataaacaattgtt |
38964574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 10078139 - 10078173
Alignment:
| Q |
50 |
tagcttcatcatttgcaagccacttgaatttagcc |
84 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
10078139 |
tagcttcatcatttgcaagcaacttgaatttagcc |
10078173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University