View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6120_low_1 (Length: 788)
Name: NF6120_low_1
Description: NF6120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6120_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 408
Target Start/End: Original strand, 40881679 - 40882066
Alignment:
| Q |
19 |
aatcaggccttcattcggcattgctttcgacatcgacggcgtcattctcctcggtaacacccccgttggtggctctccggccgcattgagaaaattatac |
118 |
Q |
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| T |
40881679 |
aatcaggccatcattcggcattgctttcgacatcgacggcgtcattctcctcggtaacacccccgttggtggctctccggccgcattgagaaaattatac |
40881778 |
T |
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| Q |
119 |
aacgatgatggtaaataaacaacgaaaaataaatactctctgtatcaattttcgctatcactgagtcatccatcaannnnnnnatctgtttattttgtta |
218 |
Q |
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| T |
40881779 |
aactatgatggtaaataaacaacgaaaagtaaatactctct--atcaattttcgctatcactgagtcatccatcaatttttttatctgtttattttgtta |
40881876 |
T |
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| Q |
219 |
ggtacgctgaaatttccttacgtttttctcacaaatggtgagttcttactcttatttttatttgttctgtttactgttagttccgtgtaattaggttaag |
318 |
Q |
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| T |
40881877 |
ggtacgctgaaatttccttacgtttttctcacaaatggtgagttcttactcttatttttatttgttctgtttactgttagttccgtgtaattaggttaag |
40881976 |
T |
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| Q |
319 |
attttatggatgattatgaaatttcatatttgcatgaatctagttcaatcaatgattcatatgcatagccagcattaggtgaataatttt |
408 |
Q |
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| T |
40881977 |
attttatggatgattatgaaatttcatatttgcatgaatctagttcaatcaatgattcatatgcatagccagcattaggtgaataatttt |
40882066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 435 - 777
Target Start/End: Original strand, 40882060 - 40882413
Alignment:
| Q |
435 |
taattttaattttatgttttacaaaggtggtggcattcctgaagctaaaagagcctccgagcttagtgaactgttgggtttaaatgtctcagcttcacag |
534 |
Q |
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| T |
40882060 |
taattttaattttatgttttacaaaggtggtggcattcctgaagctaaaagagcctccgagcttagtgaactgttgggtttaaatgtctcagcttcacag |
40882159 |
T |
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| Q |
535 |
gtatgttagaagatttttgtgttatcctctcattaatcaaggacacattaataaaaacatgaaaat---------------atggattgcttaaaaactc |
619 |
Q |
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| T |
40882160 |
gtatgttagaagatttttgtgttatcctctcattaatcaaggacacattaataaaaacatgaaaattcaactattataaaagtggattgcttaaaaattc |
40882259 |
T |
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| Q |
620 |
aactataggaacaaaatatggatgagttgtttaagcatgatgtggcataaataatgcaaatgtatttcttaaaagttttctattggtgatgctcttagta |
719 |
Q |
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| T |
40882260 |
aactataggaacaaaatatggatgagttgtttaagcatgatgtggc----ataatgcaaatgtatttcttaaaagtttgctattggtgatgctcttagta |
40882355 |
T |
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| Q |
720 |
aatttaaaattatcgatttttgaaatgctcagtagtaataatctatagtatgtgatga |
777 |
Q |
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| T |
40882356 |
aatttaaaattatcgattttggaaatgctcagtagtaataatctatagtatgtgatga |
40882413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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