View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6120_low_10 (Length: 365)
Name: NF6120_low_10
Description: NF6120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6120_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 353
Target Start/End: Original strand, 49520432 - 49520769
Alignment:
| Q |
16 |
gtattcatcatccactacaggaacaaaataaagcaaacaatcaatgttagtctctatgcacaattcgatgctcaaaaatgtaaattatgccaaatatata |
115 |
Q |
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| T |
49520432 |
gtattcatcatccactacaggaacaaaataaagcaaacaatcaatgttagtctctatgcacaattcgatgctcaaaaatgtaaattatgccaaatatata |
49520531 |
T |
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| Q |
116 |
ttataggattatttggcatcttacctatcatcatcttggaatgaacatagatcatgaatcttctagacttttgtgctctatgataatcactgtcaggcgc |
215 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49520532 |
ttataggattatttagcatcttacctatcatcatcttggaatgaacatagatcatgaatcttctagacttttgtgctctatgataatcactgtcaggcgc |
49520631 |
T |
|
| Q |
216 |
tggttcctctggaggagtgtactctccatctttcttactctcccttttaccaagacaataaaatgtcaaataatcacgagggtgtgcttcaatgttcttc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49520632 |
tggttcctctggaggagtgtactctccatctttcttactctcccttttaccaagacaataaaatgtcaaataatcacgagggtgtgcttcaatgttcttc |
49520731 |
T |
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| Q |
316 |
ttttttatggcatcagcaatctcagtatacatcatctc |
353 |
Q |
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| T |
49520732 |
ttttttatggcatcagcaatctcagtatacatcatctc |
49520769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 49509405 - 49509482
Alignment:
| Q |
135 |
cttacctatcatcatcttggaatgaacatagatcatgaatcttctagacttttgtgctctatgataatcactgtcagg |
212 |
Q |
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| T |
49509405 |
cttacctatcatcattttggcatgaacatatatcatgaatcttctagaattttgtgctctactataatcactgtcagg |
49509482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 44663162 - 44663124
Alignment:
| Q |
135 |
cttacctatcatcatcttggaatgaacatagatcatgaa |
173 |
Q |
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| T |
44663162 |
cttacctatcatcatcttggcatgaacatagatcatgaa |
44663124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 2415896 - 2415934
Alignment:
| Q |
135 |
cttacctatcatcatcttggaatgaacatagatcatgaa |
173 |
Q |
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| T |
2415896 |
cttacctatcatcatcttggtatgaacatatatcatgaa |
2415934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 5401783 - 5401739
Alignment:
| Q |
136 |
ttacctatcatcatcttggaatgaacatagatcatgaatcttcta |
180 |
Q |
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||||||||||| | ||||||||||||||| | ||||||||||||| |
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| T |
5401783 |
ttacctatcatgagcttggaatgaacataaaccatgaatcttcta |
5401739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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