View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6120_low_15 (Length: 301)

Name: NF6120_low_15
Description: NF6120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6120_low_15
NF6120_low_15
[»] chr4 (1 HSPs)
chr4 (1-293)||(51912773-51913066)


Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 51912773 - 51913066
Alignment:
Q  1 cacacgggaaatgactcttcattcggtacaccaattagtggtcattcaagctcaataacgtttggaataagacatttggaaataaccggtaattagtaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51912773 cacacgggaaatgactcttcattcggtacaccaattagtggtcattcaagctcaataacgtttggaataagacatttggaaataaccggtaattagtaat 51912872  T
Q  101 aattgagaaggaagtattgttaactttgatgatgtactgcggtagaagttgctactatacagtagtttcttcttttgctttttcccc-tggtttactgca 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  51912873 aattgagaaggaagtattgttaactttgatgatgtactgcggtagaagttgctactatacagtagtttcttcttttgctttttccccttggtttactgca 51912972  T
Q  200 cgcgtgtacgaaacagaaggaaaagaaagaaataattcacacatgggtgtgctcaatattggaaaccaaaactgactcaagttacgttcatctc 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51912973 cgcgtgtacgaaacagaaggaaaagaaagaaataattcacacatgggtgtgctcaatattggaaaccaaaactaactcaagttacgttcatctc 51913066  T

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