View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6120_low_16 (Length: 296)
Name: NF6120_low_16
Description: NF6120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6120_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 277
Target Start/End: Original strand, 29153566 - 29153835
Alignment:
| Q |
13 |
agcaaaggcaggtattacagcatgttgtggctgttgttgatttagcatcataattattagtagtagaatcaccatttgagatcacttgagttatgaagga |
112 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29153566 |
agcaaaggcaggtattacagcatgctgtggctgttg---atttggcatcataattattagtagtagaatcaccatttgagatcacttgagttatgaagga |
29153662 |
T |
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| Q |
113 |
tgttggatcgaaacgagcatcaacaatagttgaagtgaagcccaaaaggaaaaccagcaaagctaacttcatcaccattgccttcttgttcttgttcatc |
212 |
Q |
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| T |
29153663 |
tgttgaatcgaaacgagcatcaacaacagttgaagtgaagcccaaaaggaaaaccagcaaagctaacttcatcaccattgccttcttgttcttgttcatc |
29153762 |
T |
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| Q |
213 |
aactccattgttactatc--------tctttctttaatttccttgtatggagacatagctacatggtctattt |
277 |
Q |
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| T |
29153763 |
aactccattgttactatctctttgtatctttctttaatttccttgtgtggagacatagctacatggtctattt |
29153835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 81 - 237
Target Start/End: Original strand, 29206864 - 29207017
Alignment:
| Q |
81 |
tcaccatttgagatcacttgagttatgaaggatgttggatcgaaacgagcatcaacaatagttgaagtgaagcccaaaaggaaaaccagcaaagctaact |
180 |
Q |
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|||||||| |||| || |||||| |||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29206864 |
tcaccattggagagcagttgagtgatgaaggatgatccgtcgaaacgagcatcaacaacagttgaagtgaagcccaaaaggaaaaccaacaaagctaact |
29206963 |
T |
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| Q |
181 |
tcatcaccattgccttcttgttcttgttcatcaactccattgttactatctctttct |
237 |
Q |
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| T |
29206964 |
tcatcaccattgccttcttgttc---atcatcaaatccattatcactatctctttct |
29207017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 81 - 186
Target Start/End: Original strand, 29161929 - 29162034
Alignment:
| Q |
81 |
tcaccatttgagatcacttgagttatgaaggatgttggatcgaaacgagcatcaacaatagttgaagtgaagcccaaaaggaaaaccagcaaagctaact |
180 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||| |
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| T |
29161929 |
tcaccatttgagattacttgagttatgaaggatgttggatcgaaacgagcatcaacaacagttgaagtgaagcccaaaagaaaaaccaataaagctaact |
29162028 |
T |
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| Q |
181 |
tcatca |
186 |
Q |
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|||||| |
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| T |
29162029 |
tcatca |
29162034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 81 - 203
Target Start/End: Original strand, 29158258 - 29158380
Alignment:
| Q |
81 |
tcaccatttgagatcacttgagttatgaaggatgttggatcgaaacgagcatcaacaatagttgaagtgaagcccaaaaggaaaaccagcaaagctaact |
180 |
Q |
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|||||||| |||| || |||||| |||||||||| ||||||||||||||||||| || ||||||||||||| ||| |||||||||| ||||||||||| |
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| T |
29158258 |
tcaccattggagagcagttgagtgatgaaggatgcccgatcgaaacgagcatcaaccatggttgaagtgaagctcaagaggaaaaccaacaaagctaact |
29158357 |
T |
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| Q |
181 |
tcatcaccattgccttcttgttc |
203 |
Q |
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|||||| |||||||||||||||| |
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| T |
29158358 |
tcatcatcattgccttcttgttc |
29158380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 29174464 - 29174524
Alignment:
| Q |
73 |
tagtagaatcaccatttgagatcacttgagttatgaaggatgttggatcgaaacgagcatc |
133 |
Q |
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|||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
29174464 |
tagtagcatcaccattagagacaacttgagctatgaaggatgttggatcgaaacgagcatc |
29174524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 186
Target Start/End: Original strand, 29197813 - 29197906
Alignment:
| Q |
90 |
gagatcacttgagttatgaaggatgttggatcgaaacgagcatcaacaatagttgaagtgaagcccaaaaggaaaaccagcaaagctaacttcatca |
186 |
Q |
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|||||||||||||| ||||||||| ||| ||| |||||||||| ||||||||| | |||||| || ||||||| || || ||||||||| |||| |
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| T |
29197813 |
gagatcacttgagtgatgaaggattttgaatcaaaacgagcat---caatagttgcaatgaagcttaagaggaaaatcaacatagctaactttatca |
29197906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 183
Target Start/End: Original strand, 29209562 - 29209664
Alignment:
| Q |
81 |
tcaccatttgagatcacttgagttatgaaggatgttggatcgaaacgagcatcaacaatagttgaagtgaagcccaaaaggaaaaccagcaaagctaact |
180 |
Q |
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|||||||| |||| |||| |||| |||| | ||||| ||| |||||||||||||||||||||| ||||||| ||| || |||| || || || ||||| |
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| T |
29209562 |
tcaccattggagagcactcgagtggtgaatggtgttgaatcaaaacgagcatcaacaatagttgcggtgaagcacaagagcaaaagcaacacagataact |
29209661 |
T |
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| Q |
181 |
tca |
183 |
Q |
| |
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||| |
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| T |
29209662 |
tca |
29209664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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