View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6120_low_22 (Length: 258)
Name: NF6120_low_22
Description: NF6120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6120_low_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 36690339 - 36690117
Alignment:
| Q |
13 |
aggagcacagaacacatcaactacctagaggtttcctcaaataatctaaacgccccctatgttatcccataagccatatttttatgtcttattaatttaa |
112 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36690339 |
aggaccaccgaacacatcaactacctagaggtttcctcaaataatctaaacgccccctatgttatcccataagccatttttttatgtcttattaatttaa |
36690240 |
T |
|
| Q |
113 |
aatcctcaaaatgaataacnnnnnnnntatatttttaatgacttaaaaagtagttactattttgagaaagcaactgaaaca-ttattaagctaatatgtg |
211 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36690239 |
aatccttaaaatgaataacaaaaaaaatatatttttaatgact--------------tattttgagaaagcaactgaaacatttattaagctaatatgtg |
36690154 |
T |
|
| Q |
212 |
acacattatacacgtcttccacttcatacaaacatgt |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36690153 |
acacattatacacgtcttccacttcatacaaacatgt |
36690117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University