View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6120_low_26 (Length: 248)
Name: NF6120_low_26
Description: NF6120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6120_low_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 4495477 - 4495715
Alignment:
| Q |
1 |
tgagagcttcagacagaaatattctatttataaagctacaagagaatcaacaaactaactactactaacaaattctaaccaacttttctaactatctttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4495477 |
tgagagcttcagacagaaatattctacttataaagctacaagagaatcaacaaactaactactactaaaaaattctaaccaacttttctaactatctttt |
4495576 |
T |
|
| Q |
101 |
acatttatattaaaaagtacttaccagttgaagctgcatgtaaagggtttctaccagagtcacggaagagtaggattatgttatgattgtgggaataatt |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4495577 |
acatttatattaaaaagtactgaccagttgaagctgcatgtaaagggtttctaccagagtcacggaagagtaggattatgttatgattgtgggaataatt |
4495676 |
T |
|
| Q |
201 |
attgaaactttgagctgcaatttgcattgctgttctctg |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4495677 |
attgaaactttgagctgcaatttgcattgctgttctctg |
4495715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 4501049 - 4501266
Alignment:
| Q |
10 |
cagacagaaatattctatttataaagctacaagagaatcaacaaa-ctaactactactaacaaattctaaccaacttttctaactatcttttacatttat |
108 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||| |||||||||||| |||||||||||| |||||||||||| ||||||| |||| | | |
|
|
| T |
4501049 |
cagagagaaatattctatatataaagctacaatagaatcaacaaaactaactactacttacaaattctaactaactttt-------------acatgttt |
4501135 |
T |
|
| Q |
109 |
attaaaaagtacttaccagttgaagctgcatgtaaagggtttctaccagagtcacggaagagtaggattatgttatgattgtgggaataattattgaaac |
208 |
Q |
| |
|
|||| ||||| ||||||||||||||||| |||||||||||||||||||| |||| |||||||||| ||||| | ||| | | ||||||||||||||||| |
|
|
| T |
4501136 |
attagaaagttcttaccagttgaagctgattgtaaagggtttctaccagaatcacagaagagtagggttatggtttgagtattggaataattattgaaac |
4501235 |
T |
|
| Q |
209 |
tttgagctgcaatttgcattgctgttctctg |
239 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |
|
|
| T |
4501236 |
tttgagctgcaatttgcatggctgttctctg |
4501266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 4508372 - 4508499
Alignment:
| Q |
112 |
aaaaagtacttaccagttgaagctgcatgtaaagggtttctaccagagtcacggaagagtaggattatgttatgattgtgggaataattattgaaacttt |
211 |
Q |
| |
|
|||||||||| ||||| ||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4508372 |
aaaaagtactcaccagctgaagctgcttgtaaagggtttttaccagagtcacggaagaaaaggattatgttatgattgttggaataattattgaaacttt |
4508471 |
T |
|
| Q |
212 |
gagctgcaatttgcattgctgttctctg |
239 |
Q |
| |
|
|||||||||||||||| |||||| |||| |
|
|
| T |
4508472 |
gagctgcaatttgcatagctgttttctg |
4508499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 37165878 - 37165824
Alignment:
| Q |
23 |
tctatttataaagctacaagagaatcaacaaactaactactactaacaaattcta |
77 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
37165878 |
tctatttatcaagctagtagagaatcaacaaactaactattactaacaaaatcta |
37165824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University