View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6120_low_27 (Length: 246)

Name: NF6120_low_27
Description: NF6120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6120_low_27
NF6120_low_27
[»] chr6 (14 HSPs)
chr6 (69-237)||(4626761-4626929)
chr6 (91-188)||(4298997-4299094)
chr6 (117-217)||(4557955-4558055)
chr6 (91-222)||(4514297-4514428)
chr6 (106-225)||(4617847-4617966)
chr6 (91-187)||(4259330-4259426)
chr6 (94-197)||(4255800-4255903)
chr6 (115-202)||(4612918-4613005)
chr6 (83-222)||(4506682-4506821)
chr6 (105-152)||(4517216-4517263)
chr6 (115-198)||(4593083-4593166)
chr6 (18-48)||(4626950-4626980)
chr6 (91-152)||(4462018-4462079)
chr6 (104-189)||(4622998-4623083)
[»] scaffold0477 (1 HSPs)
scaffold0477 (104-225)||(3878-3999)
[»] scaffold0288 (1 HSPs)
scaffold0288 (101-220)||(2904-3023)
[»] chr8 (1 HSPs)
chr8 (115-217)||(16685486-16685588)


Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 69 - 237
Target Start/End: Complemental strand, 4626929 - 4626761
Alignment:
Q  69 atacttaaatcaagtttcgagatattgacttgtgtaattatgaaaagcagatgagacttatttgacaaatggatatttagacaccaaactagattgtatt 168  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4626929 atacttatatcaagtttcaagatattgacttgtgtaattatgaaaagcagatgagacttatttgacaaatggatatttagacaccaaactagattgtatt 4626830  T
Q  169 cccggattgcagaactttcggctgaaggaccttcttaactttataaggacaacaaatactgatgatgtc 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  4626829 cccggattgcagaactttcggctgaaggaccttcttaactttataaggacaacaaatcctaatgatgtc 4626761  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 91 - 188
Target Start/End: Original strand, 4298997 - 4299094
Alignment:
Q  91 tattgacttgtgtaattatgaaaagcagatgagacttatttgacaaatggatatttagacaccaaactagattgtattcccggattgcagaactttcg 188  Q
    ||||||||| | ||||||||| |||||||||||| |||||||||||| ||||||||||||| ||||||||| |||||||| |||||||||||||||||    
T  4298997 tattgacttctataattatgacaagcagatgagagttatttgacaaacggatatttagacatcaaactagactgtattccaggattgcagaactttcg 4299094  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 4558055 - 4557955
Alignment:
Q  117 agatgagacttatttgacaaatggatatttagacaccaaactagattgtattcccggattgcagaactttcggctgaaggaccttcttaactttataagg 216  Q
    |||||||| |||| ||||||| |||||||| ||||| ||| | ||||||||||| ||||||||||||||||| |||||||| || | | |||||||||||    
T  4558055 agatgagagttatctgacaaacggatatttggacactaaagtggattgtattccaggattgcagaactttcgactgaaggatctgcctgactttataagg 4557956  T
Q  217 a 217  Q
    |    
T  4557955 a 4557955  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 222
Target Start/End: Original strand, 4514297 - 4514428
Alignment:
Q  91 tattgacttgtgtaattatgaaaagcagatgagacttatttgacaaatggatatttagacaccaaactagattgtattcccggattgcagaactttcggc 190  Q
    |||| |||| || |||||||| | |||||||||| ||||||||||||||||||||| ||||| ||| | || || ||||| || ||||  |||||| | |    
T  4514297 tatttacttttgcaattatgatatgcagatgagagttatttgacaaatggatatttggacactaaagttgactggattccaggtttgcgaaactttagac 4514396  T
Q  191 tgaaggaccttcttaactttataaggacaaca 222  Q
    |||||||||||| | | |||||| ||||||||    
T  4514397 tgaaggaccttcctgattttatacggacaaca 4514428  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 225
Target Start/End: Complemental strand, 4617966 - 4617847
Alignment:
Q  106 ttatgaaaagcagatgagacttatttgacaaatggatatttagacaccaaactagattgtattcccggattgcagaactttcggctgaaggaccttctta 205  Q
    |||||| | |||||||||| |||| | |||||||||| ||| || || ||| ||||||| |||||||| ||| | ||||||||| |||||||| |  ||     
T  4617966 ttatgatatgcagatgagagttatctaacaaatggatgtttggaaactaaagtagattggattcccggtttgaaaaactttcggttgaaggacatcgttg 4617867  T
Q  206 actttataaggacaacaaat 225  Q
    ||||||| ||||||||||||    
T  4617866 actttatcaggacaacaaat 4617847  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 187
Target Start/End: Original strand, 4259330 - 4259426
Alignment:
Q  91 tattgacttgtgtaattatgaaaagcagatgagacttatttgacaaatggatatttagacaccaaactagattgtattcccggattgcagaactttc 187  Q
    ||||||||| ||||||||||| |||||||| |||  ||| | |||||||||||| | || |||||| |||| ||| |||| |||||| |||||||||    
T  4259330 tattgacttttgtaattatgacaagcagataagagctatctaacaaatggatatctggataccaaagtagactgtgttcctggattgaagaactttc 4259426  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 4255800 - 4255903
Alignment:
Q  94 tgacttgtgtaattatgaaaagcagatgagacttatttgacaaatggatatttagacaccaaactagattgtattcccggattgcagaactttcggctga 193  Q
    |||||| ||||||||||| |||||||| |||  ||  |||| ||||||||| | || |||||| |||||||| |||| |||||| ||||||| ||||| |    
T  4255800 tgacttttgtaattatgacaagcagataagagctacctgacgaatggatatctggataccaaagtagattgtgttcctggattgaagaacttccggctaa 4255899  T
Q  194 agga 197  Q
    ||||    
T  4255900 agga 4255903  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 202
Target Start/End: Original strand, 4612918 - 4613005
Alignment:
Q  115 gcagatgagacttatttgacaaatggatatttagacaccaaactagattgtattcccggattgcagaactttcggctgaaggaccttc 202  Q
    |||||||||| |||| ||||||| |||||||| || || ||| | || |||||||  ||||||||||||||||| |||||||| ||||    
T  4612918 gcagatgagagttatctgacaaacggatatttggatactaaagtggactgtattcaaggattgcagaactttcgactgaaggatcttc 4613005  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 222
Target Start/End: Complemental strand, 4506821 - 4506682
Alignment:
Q  83 tttcgagatattgacttgtgtaattatgaaaagcagatgagacttatttgacaaatggatatttagacaccaaactagattgtattcccggattgcagaa 182  Q
    |||| ||| ||| |||| ||||||||||| | |||||||||| |||| | |||||||||||||| ||||| ||  |||| || ||||| || |||   ||    
T  4506821 tttcaagacattaacttttgtaattatgatatgcagatgagagttatctaacaaatggatatttggacactaaggtagactggattccaggtttgagaaa 4506722  T
Q  183 ctttcggctgaaggaccttcttaactttataaggacaaca 222  Q
    |||| | ||||| || |||| | | |||||||||||||||    
T  4506721 ctttagactgaaagatcttcctgattttataaggacaaca 4506682  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 4517263 - 4517216
Alignment:
Q  105 attatgaaaagcagatgagacttatttgacaaatggatatttagacac 152  Q
    ||||||| | |||||||||| ||||||||||||||||||||| |||||    
T  4517263 attatgatatgcagatgagagttatttgacaaatggatatttggacac 4517216  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 198
Target Start/End: Complemental strand, 4593166 - 4593083
Alignment:
Q  115 gcagatgagacttatttgacaaatggatatttagacaccaaactagattgtattcccggattgcagaactttcggctgaaggac 198  Q
    |||||||||| |||| | |||||||||||||| || || ||| ||||||| ||||| || ||| | ||||||||| ||||||||    
T  4593166 gcagatgagagttatctaacaaatggatatttggaaactaaagtagattggattccaggtttgaaaaactttcggttgaaggac 4593083  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 4626980 - 4626950
Alignment:
Q  18 attaagtagagtaactcttgcaataaattga 48  Q
    |||||||||||||||||||||||||||||||    
T  4626980 attaagtagagtaactcttgcaataaattga 4626950  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 4462079 - 4462018
Alignment:
Q  91 tattgacttgtgtaattatgaaaagcagatgagacttatttgacaaatggatatttagacac 152  Q
    ||||||||| | ||||||||| | |||||||||| |||| | ||| ||||||||||||||||    
T  4462079 tattgacttttttaattatgatatgcagatgagatttatctaacagatggatatttagacac 4462018  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 189
Target Start/End: Complemental strand, 4623083 - 4622998
Alignment:
Q  104 aattatgaaaagcagatgagacttatttgacaaatggatatttagacaccaaactagattgtattcccggattgcagaactttcgg 189  Q
    |||||||  |||||||| |||  ||| |||||||||||||| | |||||| || |||| ||| |||| |||||| |||||||||||    
T  4623083 aattatgccaagcagataagagctatctgacaaatggatatctggacaccgaagtagactgtgttcctggattgaagaactttcgg 4622998  T

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Target: scaffold0477 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 104 - 225
Target Start/End: Original strand, 3878 - 3999
Alignment:
Q  104 aattatgaaaagcagatgagacttatttgacaaatggatatttagacaccaaactagattgtattcccggattgcagaactttcggctgaaggaccttct 203  Q
    |||||||||||| ||| |||| ||||||||||||||||||||||||||  | | ||||  ||||||| ||||||||||||||||||||||||||||||||    
T  3878 aattatgaaaaggagacgagagttatttgacaaatggatatttagacaatagagtagacggtattccaggattgcagaactttcggctgaaggaccttct 3977  T
Q  204 taactttataaggacaacaaat 225  Q
      || |  ||||||||||||||    
T  3978 cgacgtattaaggacaacaaat 3999  T

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Target: scaffold0288 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 101 - 220
Target Start/End: Original strand, 2904 - 3023
Alignment:
Q  101 tgtaattatgaaaagcagatgagacttatttgacaaatggatatttagacaccaaactagattgtattcccggattgcagaactttcggctgaaggacct 200  Q
    ||||||||||| |||||||||| | ||||||||||| ||||||||| |||| |||| ||||||||||||| ||  || | |||||||| || ||||||||    
T  2904 tgtaattatgacaagcagatgatagttatttgacaagtggatatttggacaacaaagtagattgtattccgggtatgaaaaactttcgactaaaggacct 3003  T
Q  201 tcttaactttataaggacaa 220  Q
    || | |||||||||| ||||    
T  3004 tcctgactttataagaacaa 3023  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 16685486 - 16685588
Alignment:
Q  115 gcagatgagacttatttgacaaatggatatttagacaccaaactagattgtattcccggattgcagaactttcggctgaaggaccttcttaactttataa 214  Q
    |||||||||| |||| ||||||| |||||||| ||||| ||| | || |||||||| |||||||||||  |||| |||||||| || | | |||||||||    
T  16685486 gcagatgagagttatctgacaaacggatatttggacactaaagtggactgtattccaggattgcagaatattcgactgaaggatctgcctgactttataa 16685585  T
Q  215 gga 217  Q
    |||    
T  16685586 gga 16685588  T

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