View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6120_low_29 (Length: 240)
Name: NF6120_low_29
Description: NF6120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6120_low_29 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 54886249 - 54886028
Alignment:
| Q |
19 |
gcgtaaacagaccccaatacctgtacggttccaagaggaagagaagaagcgtcaatgttacactttactctaccgggatgtggtttctgccacagagaag |
118 |
Q |
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| T |
54886249 |
gcgtaaacaggccccaatacctgtacggttccaagaggaagagaagaagcgtcaatgttacactttactctaccgggttgtggtttctgccacagagaag |
54886150 |
T |
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| Q |
119 |
gacttgctgacggtggacgcacatgccgagactgtgattgtaggcgctgctgagaggtgcctctggcatgttctgacctgttctgcatagatgaaggctg |
218 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54886149 |
gacttgctgacggtggatgcacatgccgagactgtgattgtaggagctgctgagaggtgcctctggcatgttctgacctgttctgcatagatgaaggctg |
54886050 |
T |
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| Q |
219 |
agagtgaggttgcgctgacagc |
240 |
Q |
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||| |||||||||||||||||| |
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| T |
54886049 |
agactgaggttgcgctgacagc |
54886028 |
T |
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