View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6120_low_3 (Length: 490)
Name: NF6120_low_3
Description: NF6120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6120_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 11 - 468
Target Start/End: Original strand, 43008702 - 43009161
Alignment:
| Q |
11 |
cacagatccttaaaaactaaatctaacttctctttcttcctaatcccagctgcaaacgccatctcaattaattctcaatatcctcctctctcaaaccttt |
110 |
Q |
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| T |
43008702 |
cacagatccttaaaaactaaatctaacttctctttcttcctaatcccagctgcaaaccccatctcaattaattctcaatatcctcctctctcaaaccttt |
43008801 |
T |
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| Q |
111 |
ataacttccttaggcagtagagtaatggaaatgccacagaaaaagcagaacctccacctagcagtagctctgctgattctattatcattaatatcatctt |
210 |
Q |
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| T |
43008802 |
ataacttcctcaggcagtagagtaatggaaatgccacagaaaaagcagaacctccaactagcagtagctctgctcattctattatcattaatatcatctt |
43008901 |
T |
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| Q |
211 |
catcatctgctaggcccttgaatgatttcagccagcttgcagaaacctcaaacatcgcacttccaagtgagagggcaatgccggaggagaaggaaggaca |
310 |
Q |
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| T |
43008902 |
catcatctgctaggcccttgaatgatttcagccagcttgcagaaacctcaaacatcgcacttccaagtgagagggcaatgccggaggagaaggaaggaca |
43009001 |
T |
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| Q |
311 |
catatcagtagtacgggaaagaggcggtgcaaaatcatatgggccattgatcctgaacatgcttcctaaggggaaagttccttcatctggaccaagcaaa |
410 |
Q |
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| T |
43009002 |
catatcagtagtacgggaaagaggcggtgcaaaatcatatgggccattgatcctgaacatgctccctaaggggaaagttccttcatctggaccaagcaaa |
43009101 |
T |
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| Q |
411 |
gggaccaacaacctcaacaactagctacaattgatga--atacttatacaattatagaca |
468 |
Q |
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| T |
43009102 |
gggaccaacaacctcaacaactagctacaattgatgaatatacttatacaattatagaca |
43009161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 434
Target Start/End: Original strand, 43015289 - 43015382
Alignment:
| Q |
341 |
aaaatcatatgggccattgatcctgaacatgcttcctaaggggaaagttccttcatctggaccaagcaaagggaccaacaacctcaacaactag |
434 |
Q |
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|||||| |||||| |||||||| | |||||||||||||||||| ||||||| |||| ||||||| ||| ||| |||||| ||||||| |||| |
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| T |
43015289 |
aaaatcgtatgggacattgatcttcaacatgcttcctaaggggggagttcctccatcaggaccaactaaaaggatcaacaatctcaacagctag |
43015382 |
T |
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