View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6120_low_30 (Length: 237)
Name: NF6120_low_30
Description: NF6120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6120_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4495330 - 4495109
Alignment:
| Q |
1 |
ctgaagaattaattactaaagagaaagttaaagtcattattggcacggaaacatggcaagaagcgtctattctggctgatgttggagccatgtttcaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||| |
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| T |
4495330 |
ctgaagaattaattactaaagagaaagttaaagtcattattggcacggaaacatggcaggaagcgtctattatggctgatgtcggagccatgtttcaagt |
4495231 |
T |
|
| Q |
101 |
accaacaatttcattttcctctccattagtcccttcatcattaatgcaacttcgttggccattcttgattcaaatggctcaaaatcaaactgcacaaatg |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4495230 |
accaacaatttcattttcctcttcattagtcccttcatcattaatgcaacttcgttggccattcttgattcaaatggctcaaaatcaaactgcacaaatg |
4495131 |
T |
|
| Q |
201 |
aaattcatatctgatataatcc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
4495130 |
aaattcatatctgatataatcc |
4495109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4500898 - 4500677
Alignment:
| Q |
1 |
ctgaagaattaattactaaagagaaagttaaagtcattattggcacggaaacatggcaagaagcgtctattctggctgatgttggagccatgtttcaagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| | |||||||||||||||||||||||||| |
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| T |
4500898 |
ctgaagaattaattactaaagagaaagttaaagtcattattggcatggaaacatggcaagaagctgctattgttgctgatgttggagccatgtttcaagt |
4500799 |
T |
|
| Q |
101 |
accaacaatttcattttcctctccattagtcccttcatcattaatgcaacttcgttggccattcttgattcaaatggctcaaaatcaaactgcacaaatg |
200 |
Q |
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|
|||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4500798 |
accaacaatttcattttcttctccattagtcccttcatcattaacgcaaactcgttggccattcttgattcagatggctcaaaatcaaactgcacaaata |
4500699 |
T |
|
| Q |
201 |
aaattcatatctgatataatcc |
222 |
Q |
| |
|
|| |||||||||| |||||||| |
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| T |
4500698 |
aacttcatatctggtataatcc |
4500677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 4508142 - 4507923
Alignment:
| Q |
1 |
ctgaagaattaattactaaagagaaagttaaagtcattattggcacggaaacatggcaagaagcgtctattctggctgatgttggagccatgtttcaagt |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| | ||||| ||||||||| ||||||| | |
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| T |
4508142 |
ctgaagatttaattactaaagagaaagttaaagtcattattggcatggaaacatggcaagaagctgctattgttgctgactttggagccaagtttcaaat |
4508043 |
T |
|
| Q |
101 |
accaacaatttcattttcct---ctccattagtcccttcatcattaatgcaacttcgttggccattcttgattcaaatggctcaaaatcaaactgcacaa |
197 |
Q |
| |
|
|||||||||||||||||| | |||| |||||| ||||||||| ||||||| |||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
4508042 |
accaacaatttcattttcttctcctccgttagtctcttcatcatcaatgcaatttcgttggcctttcttgattcaaatggctcaaaatcattctgcacaa |
4507943 |
T |
|
| Q |
198 |
atgaaattcatatctgatat |
217 |
Q |
| |
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||||| ||| || ||||||| |
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|
| T |
4507942 |
atgaacttcttagctgatat |
4507923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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