View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6120_low_31 (Length: 236)
Name: NF6120_low_31
Description: NF6120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6120_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 3353842 - 3353624
Alignment:
| Q |
1 |
ttgagtttagaacaagtgaaagcacttgagaagagttttgagattggaaacaagcttgaacctgagaggaaaatgcaattggctaaagctttggggttac |
100 |
Q |
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| T |
3353842 |
ttgagtttagaacaagtgaaagcacttgagaagagttttgagattggaaacaagcttgaacctgagaggaaaatgcaattggctaaagctttggggttac |
3353743 |
T |
|
| Q |
101 |
aacctagacaagtagctatatggttccaaaatagaagagcaaggtggaaaactaagcaacttgagaaagaatatgaagttcttaagaaacaatttgattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3353742 |
aacctagacaagtagctatatggttccaaaatagaagagcaaggtggaaaactaagcaacttgagaaagaatatgaagttcttaagaaacaatttgattc |
3353643 |
T |
|
| Q |
201 |
tcttaaggctgataataat |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
3353642 |
tcttaaggctgataataat |
3353624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 24692518 - 24692312
Alignment:
| Q |
10 |
gaacaagtgaaagcacttgagaagagttttgagattggaaacaagcttgaacctgagaggaaaatgcaattggctaaagctttggggttacaacctagac |
109 |
Q |
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| T |
24692518 |
gaacaagtgaagacacttgagaagagttttgagttaggaaacaagcttgaacctgagaggaaaatgcagctagcaagagctcttggattgcagccaagac |
24692419 |
T |
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| Q |
110 |
aagtagctatatggttccaaaatagaagagcaaggtggaaaactaagcaacttgagaaagaatatgaagttcttaagaaacaatttgattctcttaaggc |
209 |
Q |
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| T |
24692418 |
aaattgctatatggtttcaaaacagaagggctaggtggaagacaaaacagttagagaaagactatgatgttctcaaaagacaatatgatactattaaggc |
24692319 |
T |
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| Q |
210 |
tgataat |
216 |
Q |
| |
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||||||| |
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| T |
24692318 |
tgataat |
24692312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 25237145 - 25237182
Alignment:
| Q |
106 |
agacaagtagctatatggttccaaaatagaagagcaag |
143 |
Q |
| |
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|||||||| |||||||||||||||||||| |||||||| |
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| T |
25237145 |
agacaagtggctatatggttccaaaataggagagcaag |
25237182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 197
Target Start/End: Complemental strand, 2342908 - 2342736
Alignment:
| Q |
25 |
cttgagaagagttttgagattggaaacaagcttgaacctgagaggaaaatgcaattggctaaagctttggggttacaacctagacaagtagctatatggt |
124 |
Q |
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||||||||||| ||||| |||| ||||||||||| || || || ||| ||||| | ||||| ||||| ||||| || ||||||||| | |||||||||| |
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| T |
2342908 |
cttgagaagagctttgaatttgggaacaagcttgatccagaaagaaaagtgcaacttgctaaggctttagggttgcagcctagacaaattgctatatggt |
2342809 |
T |
|
| Q |
125 |
tccaaaatagaagagcaaggtggaaaactaagcaacttgagaaagaatatgaagttcttaagaaacaatttga |
197 |
Q |
| |
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| || |||||||||||||| || ||||| |||||||||||||| ||||||||||| || ||||| ||||||| |
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| T |
2342808 |
ttcagaatagaagagcaagatgcaaaacaaagcaacttgagaatgaatatgaagtcctcaagaagaaatttga |
2342736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 207
Target Start/End: Complemental strand, 17182046 - 17181849
Alignment:
| Q |
10 |
gaacaagtgaaagcacttgagaagagttttgagattggaaacaagcttgaacctgagaggaaaatgcaattggctaaagctttggggttacaacctagac |
109 |
Q |
| |
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||||||||||| ||||||||||||||||||| |||| || |||||||| ||||||||||||||||| | || | |||| | || |||||||||| |
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| T |
17182046 |
gaacaagtgaagacacttgagaagagttttgaacttggtaataagcttgagcctgagaggaaaatgcagcttgcaagagctcttaacttgcaacctagac |
17181947 |
T |
|
| Q |
110 |
aagtagctatatggttccaaaatagaagagcaaggtggaaaactaagcaacttgagaaagaatatgaagttcttaagaaacaatttgattctcttaag |
207 |
Q |
| |
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|||| ||||||||||| ||||||||||| ||||| ||||| || ||||| | || ||||| ||||| |||||||| | ||||| |||| || ||||| |
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| T |
17181946 |
aagttgctatatggtttcaaaatagaagggcaagatggaagacaaagcagttggaaaaagactatgatgttcttaaaagacaatatgatgctattaag |
17181849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 175
Target Start/End: Complemental strand, 16763117 - 16762967
Alignment:
| Q |
25 |
cttgagaagagttttgagattggaaacaagcttgaacctgagaggaaaatgcaattggctaaagctttggggttacaacctagacaagtagctatatggt |
124 |
Q |
| |
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||||| |||||||||||| | | |||||||||||||||||| |||||| | ||| | || |||| | || || ||||| |||||||| |||||||||| |
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| T |
16763117 |
cttgaaaagagttttgaggtagaaaacaagcttgaacctgataggaaagttcaacttgcaaaagagcttggtttgcaaccaagacaagttgctatatggt |
16763018 |
T |
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| Q |
125 |
tccaaaatagaagagcaaggtggaaaactaagcaacttgagaaagaatatg |
175 |
Q |
| |
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| ||||| ||||| ||||||| |||||||| || ||||| ||||| |||| |
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| T |
16763017 |
ttcaaaacagaagggcaaggttcaaaactaaacagcttgaaaaagattatg |
16762967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 39342695 - 39342756
Alignment:
| Q |
94 |
gggttacaacctagacaagtagctatatggttccaaaatagaagagcaaggtggaaaactaa |
155 |
Q |
| |
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||||| || ||||||||||||||| | ||||||||||| || |||||||| ||||| ||||| |
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| T |
39342695 |
gggttgcagcctagacaagtagctgtttggttccaaaacaggagagcaagatggaagactaa |
39342756 |
T |
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