View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6120_low_4 (Length: 482)
Name: NF6120_low_4
Description: NF6120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6120_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 5400488 - 5400018
Alignment:
| Q |
1 |
cgcaaatatcatgatttacagcattttcagccaacctaaattttatgttcatctttatggaagaaatataaacctactaatctatcttcaccactcgcgc |
100 |
Q |
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| T |
5400488 |
cgcaaatatcatgatttacagcattttcagccaacctaaattttatgttcatctttatggaagaaatataaacctactaatctatcttcaccactcgcgc |
5400389 |
T |
|
| Q |
101 |
tttccttcttcaattacattttcacttttccaatttctatgcggttataaaattctcacactaacatactcagtcactgaatcatgaatatctctactca |
200 |
Q |
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| T |
5400388 |
tttccttcttcaattacattttcacttttccaatttctatgcggttataaaattctcacactaacatactcagtcaatgaatcatgaatatctctactca |
5400289 |
T |
|
| Q |
201 |
agtttctattcagcatgtttcatgaaactgaaaaccatgatgaannnnnnnnngttctcatatattttcagagtcactataagaacatatggc------- |
293 |
Q |
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| T |
5400288 |
agtttctattcagcatgtttcatgaaactgaaaaccatgatgattttttttttgttctcacatattttcagagtcactataagaacatatgacatatata |
5400189 |
T |
|
| Q |
294 |
-atatatataccactaatacataagcatttagcacactcctcctccatggttacacaagttaacaaatttcctagcaaccaacatcattctcatttatca |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5400188 |
tatatatataccactaatacataagcatttagcacactcctcctccatggttacacaagttaacaaatttcctagcaaccaacatcattctcatttatca |
5400089 |
T |
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| Q |
393 |
gttataataaactcctaataaaagaatgaaacacataacaatgactatctatgccagaatcaaaagcaaaa |
463 |
Q |
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| T |
5400088 |
gttataataaactcctaataaaagaatgaaacacataacaatgactatctctgcgagaatcaaaagcaaaa |
5400018 |
T |
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