View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6120_low_7 (Length: 423)
Name: NF6120_low_7
Description: NF6120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6120_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 14 - 407
Target Start/End: Complemental strand, 5229814 - 5229421
Alignment:
| Q |
14 |
agggaccaatacgcaagtgaacataaagaccagcttgctgtgctagcttgacaaactttaccaagtcaaatctatcttcgaagtaatactgaaaattttc |
113 |
Q |
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| T |
5229814 |
agggaccaatacgcaagtgaacataaagaccagcttgttgtgctagcttgacaaactttaccaagtcaaatctatcttcgaagtaatactgaaaattttc |
5229715 |
T |
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| Q |
114 |
aacattgtatgaaacttgaatgagtaaaaaacattaatnnnnnnncaactaaaaggtctatttatatagaaattgaattgaagcaccattcatggaaata |
213 |
Q |
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| T |
5229714 |
aacattgtatgaaacttgaatgagtaaaaaacattaataaaaaaacaaccaaagggtctatttatatagaaattgaattgaagcacaattcatggaaata |
5229615 |
T |
|
| Q |
214 |
aatatcttcattacatttccaggagaaggctcatgtccattccaaaatacatatgtttgaataacatcaaggcctccatctttagccttttgaaataagt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5229614 |
aatatcttcattacatttccaggagaaggctcatgtccattccaaaatacatatgtttgaataacatcaaggcctccatctttagccttttgaaataagt |
5229515 |
T |
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| Q |
314 |
ctggccacatctgcattaagaaacatatttgatgaatttttagcgggaaaacttatgtacacaagactcaaatccaagacattgcataagataa |
407 |
Q |
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| T |
5229514 |
ctggccacatctgcattaagaaacatatttgatgaatttttagcgggaaaaattatgtacacaagactcaaatccaagacattgcataagataa |
5229421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 307
Target Start/End: Complemental strand, 7344476 - 7344394
Alignment:
| Q |
225 |
tacatttccaggagaaggctcatgtccattccaaaatacatatgtttgaataacatcaaggcctccatctttagccttttgaa |
307 |
Q |
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| T |
7344476 |
tacattgccaggagaaggttcatgaacattccaaaacacataagtatcaataacatctaaccctccatcttttgctttttgaa |
7344394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 209 - 339
Target Start/End: Complemental strand, 17124482 - 17124351
Alignment:
| Q |
209 |
aaataaatatc-ttcattacatttccaggagaaggctcatgtccattccaaaatacatatgtttgaataacatcaaggcctccatctttagccttttgaa |
307 |
Q |
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| T |
17124482 |
aaataaatatcatttattacttttccttgagaaggttcatgtccattccaaaatacataggtttcaatcacatcaacacctccatctttagccttttgta |
17124383 |
T |
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| Q |
308 |
ataagtctggccacatctgcattaagaaacat |
339 |
Q |
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| T |
17124382 |
ttaaatctggccacatctgcatcaacaaacat |
17124351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 17124661 - 17124567
Alignment:
| Q |
14 |
agggaccaatacgcaagtgaacataaagaccagcttgctgtgctagcttgacaaactttaccaagtcaaatctatcttcgaagtaatactgaaaa |
108 |
Q |
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|||||||||||||||| ||||||||||| |||||||| || | | |||| ||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
17124661 |
agggaccaatacgcaaatgaacataaagtccagcttgttgaaccactttgatgaacttaaccaagtcaaatctatcttcaaagtaatactgaaaa |
17124567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 325
Target Start/End: Complemental strand, 40059181 - 40059109
Alignment:
| Q |
253 |
ttccaaaatacatatgtttgaataacatcaaggcctccatctttagccttttgaaataagtctggccacatct |
325 |
Q |
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| T |
40059181 |
ttccagaaaacataggtttcaataacatcaagtcctccatctttagatttctgaataaggtctggccacatct |
40059109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 325
Target Start/End: Complemental strand, 40085119 - 40085047
Alignment:
| Q |
253 |
ttccaaaatacatatgtttgaataacatcaaggcctccatctttagccttttgaaataagtctggccacatct |
325 |
Q |
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| T |
40085119 |
ttccagaaaacataggtttcaataacatcaagtcctccatctttagatttctgaataaggtctggccacatct |
40085047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 302
Target Start/End: Complemental strand, 5450822 - 5450752
Alignment:
| Q |
232 |
ccaggagaaggctcatgtccattccaaaatacatatgtttgaataacatcaaggcctccatctttagcctt |
302 |
Q |
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| T |
5450822 |
ccaggtgaaggttcatgtccattccagaaaacataggtttgaatcacatccaatcctccttctttagcctt |
5450752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 299
Target Start/End: Original strand, 8142410 - 8142484
Alignment:
| Q |
225 |
tacatttccaggagaaggctcatgtccattccaaaatacatatgtttgaataacatcaaggcctccatctttagc |
299 |
Q |
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|||||||||||||||||| ||||| |||||||||| ||||| |||| ||| ||||| | ||||| |||||||| |
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| T |
8142410 |
tacatttccaggagaaggttcatgaacattccaaaacacataggtttcaattacatccaaacctccttctttagc |
8142484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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