View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6120_low_9 (Length: 368)
Name: NF6120_low_9
Description: NF6120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6120_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 25 - 350
Target Start/End: Original strand, 23042818 - 23043140
Alignment:
| Q |
25 |
ttgtgttgtgtacaagttcttcaaagtttgtgaagtgaatatatcaatgttgtttgaatggtaatttatgatgaattgaatcaaatgaataagataaaac |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23042818 |
ttgtgttgtgtacaagttcttcaaagtttgtgaagtgaatatatcaatgttgtttgaatggtaatttatgatgaattgaatcaaatgaataagataaaac |
23042917 |
T |
|
| Q |
125 |
aatatgaaataaaataatgtttaaccactctgtatacaatttattcctgtaacgtataaacattagaaaaaaatattgtgatttgtcnnnnnnnntaaaa |
224 |
Q |
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|||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
23042918 |
aatatgaaataaaataatgtttaaccactc--tattcaatttattcctataacgtataaacattag--aaaaatattgtgatttgtcaaaaaaaataaaa |
23043013 |
T |
|
| Q |
225 |
cacattagaaaaatactgctagatt-atatggaaaagagattaataaaatgttttaataacattgaannnnnnngtataaagactatgttggtataagta |
323 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23043014 |
cacattagaaaaatgctgctagattaatatggaaaagagattaataaaatgttttaataacattgaatttttttgtataaagactatgttggtataagta |
23043113 |
T |
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| Q |
324 |
tttagcaacatgttaatagaaacacta |
350 |
Q |
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||||||||||||||||||||||||||| |
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| T |
23043114 |
tttagcaacatgttaatagaaacacta |
23043140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 25 - 347
Target Start/End: Complemental strand, 42760502 - 42760180
Alignment:
| Q |
25 |
ttgtgttgtgtacaagttcttcaaagtttgtgaagtgaatatatcaatgttgtttgaatggtaatttatgatgaattgaatcaaatgaataagataaaac |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42760502 |
ttgtgttgtgtacaagttcttcaaagtttgtgaagtgaatatttcaatgttgtttgaatggtaatttatgatgaatggaatcaaatgaataagataaaac |
42760403 |
T |
|
| Q |
125 |
aatatgaaataaaataatgtttaaccactctgtatacaatttattcctgtaacgtataaacattagaaaaaaatattgtgatttgt--cnnnnnnnntaa |
222 |
Q |
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|| ||||||||| |||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||| ||||||||| | || |
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| T |
42760402 |
aacatgaaataagataatgtttaaccactctgtcaacaatttattcctataacgtattaacattagaaaaa---tttgtgatttataaaagaaaaaaaaa |
42760306 |
T |
|
| Q |
223 |
aacacattagaaaaatactgctagattatatggaaaagagatt-aataaaatgttttaataacattgaannnnnnngtataaagactatgttggtataag |
321 |
Q |
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||| ||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||| ||||||||||||||||| | | || |
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| T |
42760305 |
aacgcattagaaaaatactgctagattatatgggaaagagattaaataatatgttttaataacattgaatttttttgtataaagactatgttgctgttag |
42760206 |
T |
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| Q |
322 |
tatttagcaacatgttaatagaaaca |
347 |
Q |
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| T |
42760205 |
tatttagcaacatgttaatagaaaca |
42760180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 28 - 359
Target Start/End: Complemental strand, 42751037 - 42750686
Alignment:
| Q |
28 |
tgttgtgtacaagttcttcaaagtttgtgaagtgaatatatcaatgttgtttgaatggtaatttatgatgaattgaatcaaat--gaataagataaaaca |
125 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
42751037 |
tgttgtgtacaagttctttaaagtttgtgaagtgaatatttcaatgttgtttgaatggtaatttatgatgaatggaatcaaatatgaataagataaaaca |
42750938 |
T |
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| Q |
126 |
atatgaaataaaataatgtttaaccactctgtatacaatttat----------------------tcctgtaacgtataaacattagaaaaaaatattgt |
203 |
Q |
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||||||| |||||||||||| ||||| ||| || ||||||||| |||| |||||||| ||||||||||||| |||||| |
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| T |
42750937 |
atatgaattaaaataatgttcaaccaatctcta-acaatttattccttttcaaaaaaaaaaaaattcctataacgtattaacattagaaaaa--tattgt |
42750841 |
T |
|
| Q |
204 |
gatttgtcnnnnnnnntaaaacacattagaaa--aatactgctagattatatggaaaagagattaataaaatgttttaataacattgaannnnnnngtat |
301 |
Q |
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|||||||| |||||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
42750840 |
gatttgtcaaaaaac---aaacacattagaaattaataccgcaagattatacggaaaagagattaataatatgttttaataacattgaatttttttgtat |
42750744 |
T |
|
| Q |
302 |
aaagactatgttggtataagtatttagcaacatgttaatagaaacactatagaataat |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
42750743 |
aaagactatgttggtataagtatttagcaacatgttaatagaaacaatataaaataat |
42750686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 42741675 - 42741585
Alignment:
| Q |
33 |
tgtacaagttcttcaaagtttgtgaagtgaatatatcaatgttgtttgaatggtaatttatgatgaattgaatcaaatgaataagataaaa |
123 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||||||| |
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| T |
42741675 |
tgtacaagttcttcaaaggttgtgaagtgaatatatcaatgttgttttaatggtaatttatggtgagtgaaatcaaatgaataagataaaa |
42741585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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