View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6121_low_1 (Length: 243)

Name: NF6121_low_1
Description: NF6121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6121_low_1
NF6121_low_1
[»] chr2 (1 HSPs)
chr2 (1-241)||(33637814-33638054)
[»] chr8 (3 HSPs)
chr8 (3-238)||(29124533-29124768)
chr8 (27-205)||(31669440-31669618)
chr8 (40-125)||(40794307-40794392)
[»] chr3 (1 HSPs)
chr3 (4-221)||(3837593-3837810)
[»] scaffold0267 (1 HSPs)
scaffold0267 (4-221)||(13074-13291)
[»] chr4 (1 HSPs)
chr4 (4-231)||(13784529-13784753)
[»] scaffold0128 (2 HSPs)
scaffold0128 (4-231)||(34192-34416)
scaffold0128 (60-231)||(29236-29404)
[»] chr7 (1 HSPs)
chr7 (157-223)||(20476292-20476358)


Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 33637814 - 33638054
Alignment:
Q  1 atcatatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33637814 atcatatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgt 33637913  T
Q  101 gacgtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaaca 200  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33637914 gacgtgctaaccaattaacactaccattcacgaattgtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaaca 33638013  T
Q  201 actatctcccatgcaatgaaccctcccctcccatttctgtg 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  33638014 actatctcccatgcaatgaaccctcccctcccatttctgtg 33638054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 3 - 238
Target Start/End: Complemental strand, 29124768 - 29124533
Alignment:
Q  3 catatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtga 102  Q
    |||||||||||| ||||||| |||||||||||  |||||||| | ||| || | ||   ||||||||||| ||| || |||||||||||||| | | |||    
T  29124768 catatacttacatgcctccagccgcatatcaagtgataaaattattaactgatcgacaataacatttttcaattcattcatatgacaatttaagctatga 29124669  T
Q  103 cgtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaac 202  Q
    ||||||||| | |||| ||||||||||||| |||||||||| |||||||||    ||||||||||||||||||||||||||| |||||||||||||||||    
T  29124668 cgtgctaactagttaatactaccattcacgaatggtccaacaagagtgccttttggtagaattggaaaatcagggcaagcaagagtctttctccaacaac 29124569  T
Q  203 tatctcccatgcaatgaaccctcccctcccatttct 238  Q
    | || |||||||||||||| ||||| ||||||||||    
T  29124568 tttcacccatgcaatgaactctcccttcccatttct 29124533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 205
Target Start/End: Complemental strand, 31669618 - 31669440
Alignment:
Q  27 catatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactacca 126  Q
    |||||||| ||||||||| ||||| |||| || | |||||||||   ||| || ||||||  |||||| | | ||| |||||||| | |||| |||||||    
T  31669618 catatcaagcgataaaattactaagtggtcgacgataacattttgaaattcattcatatggaaatttaagctatgatgtgctaacaagttaatactacca 31669519  T
Q  127 ttcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaactat 205  Q
    |||||| |||||||||| | || | ||   |||| ||||||||||||||||||||||| ||||||||||||||| ||||    
T  31669518 ttcacgaatggtccaacaaaagcgtcttttagtaaaattggaaaatcagggcaagcaaaagtctttctccaacatctat 31669440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 40794307 - 40794392
Alignment:
Q  40 aaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactacc 125  Q
    |||| ||||||||| | |||||||||||||| |||||||||   || ||  |||| ||||||| |||||||| | |||||||||||    
T  40794307 aaaaccactaattgttggatggtaacattttcccatttataatcattactgtttaagttgtgaagtgctaactagttaacactacc 40794392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 3837810 - 3837593
Alignment:
Q  4 atatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgac 103  Q
    ||||||||||| |||||| | |||| ||||| ||| ||||||| ||| ||||||||||||||||||| || || ||||| ||||||||||| ||| |||     
T  3837810 atatacttacatgcctcctttcgcaaatcaagcgaaaaaatcaataactggttgatggtaacattttccctttcatacaaatgacaatttaagttatgat 3837711  T
Q  104 gtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaact 203  Q
      | |||||| |||||||||||||||||| |||||||||||| ||| | |   |||| ||||||||||||| ||||||||| ||| ||||||||| ||||    
T  3837710 acgttaaccagttaacactaccattcacgaatggtccaacgatagtcctttgtagtaaaattggaaaatcatggcaagcaagagtatttctccaagaact 3837611  T
Q  204 atctcccatgcaatgaac 221  Q
    ||| ||||||||||||||    
T  3837610 atcgcccatgcaatgaac 3837593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 13291 - 13074
Alignment:
Q  4 atatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgac 103  Q
    ||||||||||| | |||| | |||| ||||| ||| ||||||| ||| ||||| ||||||||||||| || || ||||| ||||||||||| ||| |||     
T  13291 atatacttacatgtctcctttcgcaaatcaagcgaaaaaatcaataactggttaatggtaacattttccctttcatacaaatgacaatttaagttatgat 13192  T
Q  104 gtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaact 203  Q
      | |||||| ||||||||||||||||   |||||||||||| ||| | |   |||| ||||||||||||| ||||||||| ||| ||||||||| ||||    
T  13191 acgttaaccagttaacactaccattcagaaatggtccaacgatagtcctttgtagtaaaattggaaaatcatggcaagcaagagtatttctccaagaact 13092  T
Q  204 atctcccatgcaatgaac 221  Q
    ||| ||||||||||||||    
T  13091 atcgcccatgcaatgaac 13074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 13784529 - 13784753
Alignment:
Q  4 atatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgac 103  Q
    |||||||||||   |||| |||||| |||||  || |||| ||||||||| | ||| |||| ||||| |||||||||   || ||  |||| |||||||     
T  13784529 atatacttacatttctccttccgcagatcaagtgaaaaaaccactaattgttggatagtaatattttcccatttataatcatcactgtttaagttgtgaa 13784628  T
Q  104 gtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaact 203  Q
    |||||||||| |||||||||||||||||| ||||||||  |  ||| | |   |||||||||||||||  ||||||| | ||||||||||||||||||||    
T  13784629 gtgctaaccagttaacactaccattcacgaatggtccattggaagttcgt---agtagaattggaaaagtagggcaatcgatagtctttctccaacaact 13784725  T
Q  204 atctcccatgcaatgaaccctcccctcc 231  Q
    ||| ||||| |||||||| |||||||||    
T  13784726 atcacccatacaatgaactctcccctcc 13784753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 34192 - 34416
Alignment:
Q  4 atatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgac 103  Q
    ||||||||||| | |||| |||||| |||||  || |||| ||||||||| | |||||||||||||| |||||||||   || ||  |||| |||||||     
T  34192 atatacttacatgtctccttccgcagatcaagtgaaaaaaccactaattgttggatggtaacattttcccatttataatcatcactgtttaagttgtgaa 34291  T
Q  104 gtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaact 203  Q
    |||||||||| |||||||| ||||||||| ||||||||  |  | |   ||  |||||||||||||||  ||||||| | | ||||||||||||||||||    
T  34292 gtgctaaccagttaacactgccattcacgaatggtccattggaaat---tcgtagtagaattggaaaagtagggcaatcgagagtctttctccaacaact 34388  T
Q  204 atctcccatgcaatgaaccctcccctcc 231  Q
    ||| ||||| || ||||| |||||||||    
T  34389 atcacccatacagtgaactctcccctcc 34416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 231
Target Start/End: Original strand, 29236 - 29404
Alignment:
Q  60 ggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagt 159  Q
    ||||||||||| |||||||||  ||| ||| |||| ||| ||| |||||||||| |||||||||||||||||| ||||||||  |  |||   ||  |||    
T  29236 ggtaacattttcccatttataattatcacagtttacgttttgaagtgctaaccagttaacactaccattcacgaatggtccattgcaagt---tcgtagt 29332  T
Q  160 agaattggaaaatcagggcaagcaatagtctttctccaacaactatctcccatgcaatgaaccctcccctcc 231  Q
    ||||||||||||  ||||||| |   ||||||||||||||||||||| | ||| |||||||| |||||||||    
T  29333 agaattggaaaagtagggcaatcgggagtctttctccaacaactatcactcatacaatgaactctcccctcc 29404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 20476292 - 20476358
Alignment:
Q  157 agtagaattggaaaatcagggcaagcaatagtctttctccaacaactatctcccatgcaatgaaccc 223  Q
    |||||||||||||||   |||||| | ||| |||| ||||||||| |||| ||||||||||||||||    
T  20476292 agtagaattggaaaagtggggcaaactataatcttcctccaacaattatcacccatgcaatgaaccc 20476358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University