View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6121_low_2 (Length: 239)
Name: NF6121_low_2
Description: NF6121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6121_low_2 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0267 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0128 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 33637477 - 33637699
Alignment:
| Q |
17 |
aatttggttgtcaagaagttcaatatgttcagctttatcatctctcctattatacataataatatcatcaaaagctcctttgctagccatcaacatgaca |
116 |
Q |
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| T |
33637477 |
aatttggttgtcaagaagttcaatatgttcagctctatcatctctcctattatacatactaatatcatcaaaagctcctttgctagccagcaacatgaca |
33637576 |
T |
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| Q |
117 |
tttccattttcagagagacaaaccggaaacaaccaatcaactaaattgagattcatagaaatacccaattgaacatagctaacattcaccaatcgagtcc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33637577 |
tttccattttcagagagacaaaccggaaacaaccaatcaactaaattgagattcacacaaatacccaattgaacatagctaacattcaccaatcgagtcc |
33637676 |
T |
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| Q |
217 |
aagactcttgaactccaaactct |
239 |
Q |
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| T |
33637677 |
aagactcttgaactccaaactct |
33637699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 13465 - 13412
Alignment:
| Q |
186 |
tgaacatagctaacattcaccaatcgagtccaagactcttgaactccaaactct |
239 |
Q |
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| T |
13465 |
tgaacatagctaacattcaccaactgagtccaagactcttgaactccaaactct |
13412 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 20475969 - 20476018
Alignment:
| Q |
190 |
catagctaacattcaccaatcgagtccaagactcttgaactccaaactct |
239 |
Q |
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| T |
20475969 |
catagctaacattcaccaaccgagtccaagactcttgaaccccaaactct |
20476018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 3837980 - 3837931
Alignment:
| Q |
190 |
catagctaacattcaccaatcgagtccaagactcttgaactccaaactct |
239 |
Q |
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| T |
3837980 |
catagctaacattcaccaactgagtccaagactcttgaactccaaactct |
3837931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 34021 - 34071
Alignment:
| Q |
189 |
acatagctaacattcaccaatcgagtccaagactcttgaactccaaactct |
239 |
Q |
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| T |
34021 |
acataactgacattcaccaaccgagtccaagattcttgaactccatactct |
34071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 29124973 - 29124927
Alignment:
| Q |
193 |
agctaacattcaccaatcgagtccaagactcttgaactccaaactct |
239 |
Q |
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| T |
29124973 |
agctaatattcaccaagtgggtccaagactcttgaactccaaactct |
29124927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 13784358 - 13784408
Alignment:
| Q |
189 |
acatagctaacattcaccaatcgagtccaagactcttgaactccaaactct |
239 |
Q |
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| T |
13784358 |
acataactgacattcaccaaccgagtccaagattcttgaactccatactct |
13784408 |
T |
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