View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6123_low_1 (Length: 390)
Name: NF6123_low_1
Description: NF6123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6123_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 47 - 372
Target Start/End: Original strand, 5386051 - 5386370
Alignment:
| Q |
47 |
gaagtggcaaatactactgaaactcacacacacaactatggaattttggattcgaatccgcttgaaggcgtctaacctaacaatttcggcattccctgtt |
146 |
Q |
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| T |
5386051 |
gaagtggcaaatactactgaaactcacacacacaattatggaattttggattcgaatccgcttgaaggcgcctaacctaacaatttcggcattccctgtt |
5386150 |
T |
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| Q |
147 |
gaactagtctttacggaccaataaccacaacttacgaattaaccctaatattagttcattggaaccgattacttcctttgttgagtcgtttgaagaaatt |
246 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5386151 |
gaactagtctttacggaccaataaccacaacttacggattaaccctaatattagttcattggaaccgattacttcctttgttgagtcgtttgaagaaatt |
5386250 |
T |
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| Q |
247 |
ttcacgtacatattttgaattagacagatataagagctaagcagcgactaaagtatcaaataaagttgtttattctgatctaaaactacttaccccatca |
346 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5386251 |
ttcacgta------ttgaattagacagatataagagctaagcagtgactaaagtatcaaataaagttgtttattctgatctaaaactacttaccccatca |
5386344 |
T |
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| Q |
347 |
aaagctaaaaccaaaaaaccatttct |
372 |
Q |
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|||||||||||||||||||||||||| |
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| T |
5386345 |
aaagctaaaaccaaaaaaccatttct |
5386370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 26757979 - 26758055
Alignment:
| Q |
63 |
ctgaaactcacacacacaactatggaattttggattcgaatccgcttgaaggcgtctaacctaacaatttcggcatt |
139 |
Q |
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||||||||||||||||||||| || || || |||||||||| |||| | ||||||||||||||| |||||||| |
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| T |
26757979 |
ctgaaactcacacacacaactgtgatgttacgggttcgaatccgggtgaaagtgtctaacctaacaatatcggcatt |
26758055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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