View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6123_low_3 (Length: 347)
Name: NF6123_low_3
Description: NF6123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6123_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 10002187 - 10001859
Alignment:
| Q |
1 |
ttatcgagaaaagtgaacagacgaccatgttagcagtttcttataacctgaataagcagcttagtttttgttgaattgagctttgaattttgattgttaa |
100 |
Q |
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| T |
10002187 |
ttatcgagaaaagtgaacagacgaccatgttagcagtttcttataacctgaataagcagcttagtttttgttgaattgacctttgaattttcattggtaa |
10002088 |
T |
|
| Q |
101 |
aacttgaaaaaattgaatgattagtgattaaagtcatacaagttgaacaattaccgtcaaatttaacgaacttatagtgtagaattgtgaaggaataaga |
200 |
Q |
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| T |
10002087 |
aacttgaaaaaattgaatgattagtgattaaagtcatacaagttgaacaattaccgtcaaatttaacgaacttatagtgtagaattgtgaaggaataaga |
10001988 |
T |
|
| Q |
201 |
acttatcaagccttatttttaactcatctctgtttattttgtattgcacattgtacagtgctttgaattggtggaccatcatgtccaacttttcttctca |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10001987 |
acttatcaagccttatttttaactcatctctgtttgttttgtattgcacattgtacagtgctttgaattggtggaccatcatgttcaacttttcttctca |
10001888 |
T |
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| Q |
301 |
aaaatagctcgaatgatgcctgcagaact |
329 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
10001887 |
aaaatagctcgaatgatgcctgcagaact |
10001859 |
T |
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