View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6123_low_4 (Length: 324)

Name: NF6123_low_4
Description: NF6123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6123_low_4
NF6123_low_4
[»] chr8 (3 HSPs)
chr8 (130-324)||(26899157-26899353)
chr8 (18-77)||(26899406-26899465)
chr8 (27-77)||(26936738-26936788)
[»] chr4 (3 HSPs)
chr4 (18-77)||(2191513-2191572)
chr4 (27-77)||(10564880-10564930)
chr4 (18-77)||(34851223-34851282)
[»] chr6 (5 HSPs)
chr6 (21-77)||(11121757-11121813)
chr6 (20-77)||(22427905-22427962)
chr6 (21-77)||(24316961-24317017)
chr6 (18-74)||(720623-720679)
chr6 (27-77)||(15559280-15559330)
[»] chr1 (5 HSPs)
chr1 (18-77)||(15853008-15853067)
chr1 (18-77)||(32830272-32830331)
chr1 (21-77)||(1609447-1609503)
chr1 (38-77)||(10399258-10399297)
chr1 (19-47)||(18525933-18525961)
[»] chr2 (3 HSPs)
chr2 (29-77)||(9894215-9894263)
chr2 (28-77)||(4160132-4160181)
chr2 (21-77)||(9160686-9160742)
[»] chr7 (4 HSPs)
chr7 (18-77)||(13576352-13576411)
chr7 (21-74)||(21292661-21292714)
chr7 (21-77)||(24648685-24648741)
chr7 (21-77)||(7792641-7792697)
[»] chr5 (1 HSPs)
chr5 (21-77)||(16044805-16044861)
[»] scaffold0014 (1 HSPs)
scaffold0014 (22-77)||(15763-15818)
[»] chr3 (1 HSPs)
chr3 (18-77)||(46028630-46028689)


Alignment Details
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 130 - 324
Target Start/End: Complemental strand, 26899353 - 26899157
Alignment:
Q  130 ctgacccagttaacaatatattctgataatttgacatccttttttctctttggtatgannnnnnnnnn-aagaagacaaactagggaaaattgaatctaa 228  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||           |||||||||||||||||||||||||||||||    
T  26899353 ctgacccagttaacaatatattctgataatttgacatccctttttctctttggtatgatttttttttttaagaagacaaactagggaaaattgaatctaa 26899254  T
Q  229 gatcttaggaaggacatattttaaagttccaatccaacaccattgaatcaactcaagtggatttttgtataac-ttttcggaatctctcatgcatgc 324  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  26899253 gatcttaggaaggacatattttaaagtttcaatccaacaccattgaatcaactcaagtggatttttgtatgactttttcggaatctctcatgcatgc 26899157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 26899465 - 26899406
Alignment:
Q  18 ataaaaaataatagtgtccaactaagttggtgtcctactctaatatgttgtcaattgctc 77  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  26899465 ataaaaaataatagtgtccaattaagttggtgtcctaatctaatatgttgtcaattgctc 26899406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 26936788 - 26936738
Alignment:
Q  27 aatagtgtccaactaagttggtgtcctactctaatatgttgtcaattgctc 77  Q
    |||||||||||||||||||| |  ||||||||||| |||||||||||||||    
T  26936788 aatagtgtccaactaagttgataccctactctaatttgttgtcaattgctc 26936738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 2191513 - 2191572
Alignment:
Q  18 ataaaaaataatagtgtccaactaagttggtgtcctactctaatatgttgtcaattgctc 77  Q
    ||||||||||||||||||||||||||||||   ||||||||||| |||||||||||||||    
T  2191513 ataaaaaataatagtgtccaactaagttgggaccctactctaatctgttgtcaattgctc 2191572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 10564880 - 10564930
Alignment:
Q  27 aatagtgtccaactaagttggtgtcctactctaatatgttgtcaattgctc 77  Q
    ||||| ||||||||||||||||  ||||||||||| |||||||||||||||    
T  10564880 aatagagtccaactaagttggtaccctactctaatctgttgtcaattgctc 10564930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 34851223 - 34851282
Alignment:
Q  18 ataaaaaataatagtgtccaactaagttggtgtcctactctaatatgttgtcaattgctc 77  Q
    |||||||| || ||||||||||||||||||   |||| |||||| |||||||||||||||    
T  34851223 ataaaaaagaacagtgtccaactaagttgggaccctattctaatttgttgtcaattgctc 34851282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 11121813 - 11121757
Alignment:
Q  21 aaaaataatagtgtccaactaagttggtgtcctactctaatatgttgtcaattgctc 77  Q
    ||||| ||||||||||||||||||||||  ||||||||||| |||||||||||||||    
T  11121813 aaaaagaatagtgtccaactaagttggtaccctactctaatttgttgtcaattgctc 11121757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 22427905 - 22427962
Alignment:
Q  20 aaaaaataatagtgtccaactaagttggtgtcctactctaatatgttgtcaattgctc 77  Q
    |||||| |||||||||||| |||||||| | ||||||||||||| |||||||||||||    
T  22427905 aaaaaagaatagtgtccaattaagttggagccctactctaatattttgtcaattgctc 22427962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 24317017 - 24316961
Alignment:
Q  21 aaaaataatagtgtccaactaagttggtgtcctactctaatatgttgtcaattgctc 77  Q
    ||||| ||||||||||||||||||||||  ||||||||||  |||||||||||||||    
T  24317017 aaaaagaatagtgtccaactaagttggtaccctactctaaattgttgtcaattgctc 24316961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 720679 - 720623
Alignment:
Q  18 ataaaaaataatagtgtccaactaagttggtgtcctactctaatatgttgtcaattg 74  Q
    |||||||| |||||||||||||||||||||   ||| ||||||| ||||||||||||    
T  720679 ataaaaaagaatagtgtccaactaagttgggaccctgctctaatctgttgtcaattg 720623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 15559280 - 15559330
Alignment:
Q  27 aatagtgtccaactaagttggtgtcctactctaatatgttgtcaattgctc 77  Q
    ||||||||||||||||||||||  ||||||||||| | ||| |||||||||    
T  15559280 aatagtgtccaactaagttggtaccctactctaatctattgccaattgctc 15559330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 15853008 - 15853067
Alignment:
Q  18 ataaaaaataatagtgtccaactaagttggtgtcctactctaatatgttgtcaattgctc 77  Q
    |||||||| |||||||||||||||||||||   ||||||||||| |||||||||||||||    
T  15853008 ataaaaaagaatagtgtccaactaagttgggaccctactctaatctgttgtcaattgctc 15853067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 32830331 - 32830272
Alignment:
Q  18 ataaaaaataatagtgtccaactaagttggtgtcctactctaatatgttgtcaattgctc 77  Q
    |||||||| ||||||||||||||||||||    ||||||||||| |||||||||||||||    
T  32830331 ataaaaaagaatagtgtccaactaagttgaaaccctactctaatctgttgtcaattgctc 32830272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 1609503 - 1609447
Alignment:
Q  21 aaaaataatagtgtccaactaagttggtgtcctactctaatatgttgtcaattgctc 77  Q
    ||||| |||||||||||| ||||||||   |||||||||||||||||||| ||||||    
T  1609503 aaaaagaatagtgtccaattaagttggaaccctactctaatatgttgtcagttgctc 1609447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 10399258 - 10399297
Alignment:
Q  38 actaagttggtgtcctactctaatatgttgtcaattgctc 77  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  10399258 actaagttggtagcctactctaatatgttgtcaattgctc 10399297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 18525961 - 18525933
Alignment:
Q  19 taaaaaataatagtgtccaactaagttgg 47  Q
    |||||||||||||||||||||||||||||    
T  18525961 taaaaaataatagtgtccaactaagttgg 18525933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 9894263 - 9894215
Alignment:
Q  29 tagtgtccaactaagttggtgtcctactctaatatgttgtcaattgctc 77  Q
    |||||||||||||||||||| |||||| ||||||||||| |||||||||    
T  9894263 tagtgtccaactaagttggtatcctaccctaatatgttgccaattgctc 9894215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 4160181 - 4160132
Alignment:
Q  28 atagtgtccaactaagttggtgtcctactctaatatgttgtcaattgctc 77  Q
    |||||| ||||||||||||||| | |||| |||||| |||||||||||||    
T  4160181 atagtgcccaactaagttggtgacatactataatattttgtcaattgctc 4160132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 9160742 - 9160686
Alignment:
Q  21 aaaaataatagtgtccaactaagttggtgtcctactctaatatgttgtcaattgctc 77  Q
    ||||| ||| |||||||||||||||||   |||||||||||||||||| | ||||||    
T  9160742 aaaaagaatggtgtccaactaagttggaaccctactctaatatgttgtaagttgctc 9160686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 13576411 - 13576352
Alignment:
Q  18 ataaaaaataatagtgtccaactaagttggtgtcctactctaatatgttgtcaattgctc 77  Q
    |||||||| ||||||||||||||||||||||  | ||||||||| | |||||||||||||    
T  13576411 ataaaaaagaatagtgtccaactaagttggtaccgtactctaatcttttgtcaattgctc 13576352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 21292714 - 21292661
Alignment:
Q  21 aaaaataatagtgtccaactaagttggtgtcctactctaatatgttgtcaattg 74  Q
    ||||| |||||||| |||||||||||||  ||||||||||||| ||||||||||    
T  21292714 aaaaagaatagtgttcaactaagttggtaccctactctaatatattgtcaattg 21292661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 24648741 - 24648685
Alignment:
Q  21 aaaaataatagtgtccaactaagttggtgtcctactctaatatgttgtcaattgctc 77  Q
    ||||| ||||||||||||||||||||||  ||||||||||| |  ||||||||||||    
T  24648741 aaaaagaatagtgtccaactaagttggtaccctactctaatcttgtgtcaattgctc 24648685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 7792641 - 7792697
Alignment:
Q  21 aaaaataatagtgtccaactaagttggtgtcctactctaatatgttgtcaattgctc 77  Q
    ||||| |||| |||| ||||||||||||  ||||||||||| ||||| |||||||||    
T  7792641 aaaaagaataatgtcaaactaagttggtaccctactctaatttgttgccaattgctc 7792697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 16044861 - 16044805
Alignment:
Q  21 aaaaataatagtgtccaactaagttggtgtcctactctaatatgttgtcaattgctc 77  Q
    ||||| |||| ||| ||||||||||||| ||| |||||||| |||||||||||||||    
T  16044861 aaaaagaataatgtacaactaagttggtatccaactctaatttgttgtcaattgctc 16044805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 15763 - 15818
Alignment:
Q  22 aaaataatagtgtccaactaagttggtgtcctactctaatatgttgtcaattgctc 77  Q
    |||| ||||||||||||||||||||    ||||||||||||||||| |||||||||    
T  15763 aaaagaatagtgtccaactaagttgagaccctactctaatatgttgccaattgctc 15818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 46028689 - 46028630
Alignment:
Q  18 ataaaaaataatagtgtccaactaagttggtgtcctactctaatatgttgtcaattgctc 77  Q
    ||||||||||||||||||||| ||||||||   | | ||||||| |||||||||||||||    
T  46028689 ataaaaaataatagtgtccaattaagttgggaccttgctctaatttgttgtcaattgctc 46028630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University