View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6124_high_1 (Length: 985)
Name: NF6124_high_1
Description: NF6124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6124_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 679; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 679; E-Value: 0
Query Start/End: Original strand, 228 - 970
Target Start/End: Complemental strand, 52113498 - 52112756
Alignment:
| Q |
228 |
gtccggcacagacacaacatcgtcattagtttcacccgaaccacccaaaaaactttcaatgcgaagaatccctggagattacggcctcccattcgtaggt |
327 |
Q |
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| T |
52113498 |
gtccggcacagacacaacatcgtcattagtttcacccgaaccacccaaaaaacttccaatgcgaagaatccctggagattacggcctcccattcgtaggt |
52113399 |
T |
|
| Q |
328 |
cctatcaaagaccgtcttgaatatttctacaacgaaggcggccgcgacaaatatttcagaagtaaaatgcacaaatacaaatcaaccatttttcgcgcta |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52113398 |
cctatcaaagaccgtcttgaatatttctacaacgaaggcggccgcgacaaatatttcagaagcaaaatgcacaaatacaaatcaaccatttttcgcgcta |
52113299 |
T |
|
| Q |
428 |
atatgccaccaggcccattcatttcctcaaacccaaccgtcattgttttacttgacggaaaatcattccctgttctcttcgacaattccaaagttgaaaa |
527 |
Q |
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| T |
52113298 |
atatgccaccaggcccattcatttcctctaacccaaacgtcattgttttacttgacggaaaatcattccctgttctcttcgacaattccaaagttgaaaa |
52113199 |
T |
|
| Q |
528 |
acgtgaccccttcgccggaactttcatgacgtcaacagaactccctggtggttacattatcctctcttcccttgatccaaccgaaccaaaacacgaccaa |
627 |
Q |
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|||||||| |||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
52113198 |
acgtgacctcttcaccggaactttcatgccgtcaacagaactcactggtggttaccgtatcctctcttaccttgatccaaccgaaccaaaacacgaccaa |
52113099 |
T |
|
| Q |
628 |
ctcaaacgcattcttttcttcctcctcaagtcacgtagtagccactttatccctgagttccactcatcttacacaaacctctttaacactctagaaaaag |
727 |
Q |
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| T |
52113098 |
ctcaaacgccttcttttcttcctcctcaagtcacgtagtagccactttatccctgagtttcactcatcttacacaaacctctttaacactctagaaaaag |
52112999 |
T |
|
| Q |
728 |
agcttgtaaaaacaggatatgcaattttcgccgacgcaaacgatcaagcagcttttaactaccttgcaaaagcatttttcggtacaaaccctaccgaaac |
827 |
Q |
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|||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52112998 |
agcttgcaaaaacaggaaatgcaattttcgccgatgcaaacgatcaagcagcttttaactaccttgcaaaagcatttttcggtacaaaccctaccgaaac |
52112899 |
T |
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| Q |
828 |
aaatctcaaaagcgatggtccaaaaatagtaacaaaatggacattgatgcagctaagtccaattcttacgttaggtcttcctaaatggattgaggaacca |
927 |
Q |
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| T |
52112898 |
aaatctcaaaagcgatggtccaaaaatagtaacaaaatggacattgatgcagctaagtccaattcttacgttaggtcttcctaaatggattgaggaacca |
52112799 |
T |
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| Q |
928 |
gcccttcatacgttccgtcttccaccatttttggtgaagaaag |
970 |
Q |
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| T |
52112798 |
gcccttcatacgttccgtcttccaccatttttggtgaagaaag |
52112756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 8e-73
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 52113712 - 52113520
Alignment:
| Q |
11 |
catcatcatcacttacctcctcaatatcttatactttccttcaaccagaatttgcattaaaaagaacgataaaacaccgcaatcgctgctccatttccaa |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52113712 |
catcatcatcacttacctcctcaatatcttatactttccttcaaccagaatttccatttaaaagaacgataaaacaccacaatcgctgctccatttccaa |
52113613 |
T |
|
| Q |
111 |
atgtcctttcattccaatttcagtcactccattgaaagcatcagtgtccaacccagataagacatnnnnnnnaactccaattactccaataga |
203 |
Q |
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| T |
52113612 |
atgtcctttcactccaatttcagcgactccattgaaagcatcagtgtccaacccagatacgacatcctccccaattccaattactccaataga |
52113520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 430 - 463
Target Start/End: Original strand, 12505202 - 12505235
Alignment:
| Q |
430 |
atgccaccaggcccattcatttcctcaaacccaa |
463 |
Q |
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||||||||||| |||||||||||||||||||||| |
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| T |
12505202 |
atgccaccaggtccattcatttcctcaaacccaa |
12505235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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