View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6124_high_18 (Length: 257)
Name: NF6124_high_18
Description: NF6124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6124_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 47 - 242
Target Start/End: Complemental strand, 44475740 - 44475542
Alignment:
| Q |
47 |
caaagttgaagaaaaataattacacgggctgaatggtttgattgagnnnnnnntacagcaaatcaacattgtcatcggtttatcgaaagcaatatgtgtt |
146 |
Q |
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| T |
44475740 |
caaagttgaagaaaaataattacacgggctgaatggtttgattgagaaaaaaatacagcaaatcaacattgtcatcggtttatcgaaagcaatatgtgtt |
44475641 |
T |
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| Q |
147 |
atttgacgccaaataaatgtagaaactcattagctatcattatattctttgatgaat--cgagatacat------taagcttatcaatgtagtttatgaa |
238 |
Q |
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| T |
44475640 |
atttgacgctaaataaatgcagaaactcattagctatc-----attctttgatgaatcgcgagataaatgattcataagcttatcaatgtagtttatgaa |
44475546 |
T |
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