View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6124_high_20 (Length: 253)

Name: NF6124_high_20
Description: NF6124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6124_high_20
NF6124_high_20
[»] chr5 (5 HSPs)
chr5 (17-234)||(1724430-1724647)
chr5 (25-253)||(1760051-1760279)
chr5 (61-212)||(1739041-1739192)
chr5 (50-216)||(1744380-1744546)
chr5 (95-183)||(1763478-1763566)
[»] chr3 (4 HSPs)
chr3 (25-214)||(3167258-3167456)
chr3 (97-236)||(3156895-3157034)
chr3 (51-236)||(2022788-2022982)
chr3 (97-198)||(3139181-3139282)
[»] chr8 (2 HSPs)
chr8 (97-236)||(23852122-23852261)
chr8 (97-237)||(23856688-23856829)
[»] chr7 (4 HSPs)
chr7 (97-165)||(7491189-7491257)
chr7 (125-165)||(7498938-7498978)
chr7 (97-196)||(9012035-9012134)
chr7 (109-211)||(7484447-7484549)


Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 1724647 - 1724430
Alignment:
Q  17 agtttccgataataagaggatgtaaaaaagctatttggataactaaaataagggttaaagtgaggttctcctaaacctaaatcataccttagtttacgtt 116  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1724647 agtttccgataataaggggatgtaaaaaagctatttggataactaaaataaaggttaaagtgaggttctcctaaacctaaatcataccttagtttacgtt 1724548  T
Q  117 gcttttttaatgcacgttctgccttatgagcattttggtgccctcctaacgcctgtgaagtagaaaattttctcttgcaaaataagcatgaaaaagacct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1724547 gcttttttaatgcacgttctgccttatgagcattttggtgccctcctaacgcctgtgaagtagaaaattttctcttgcaaaataagcatgaaaaagacct 1724448  T
Q  217 cgagtccaaattcttctc 234  Q
    | ||| ||||||||||||    
T  1724447 caagttcaaattcttctc 1724430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 25 - 253
Target Start/End: Complemental strand, 1760279 - 1760051
Alignment:
Q  25 ataataagaggatgtaaaaaagctatttggataactaaaataagggttaaagtgaggttctcctaaacctaaatcataccttagtttacgttgctttttt 124  Q
    |||||| |||| |||||||||  ||| |||||||||||||||||||||||| |||||||  ||||||||||| || |||||| ||||||||||||||| |    
T  1760279 ataatacgagggtgtaaaaaaagtatctggataactaaaataagggttaaaatgaggttaccctaaacctaattcctacctttgtttacgttgcttttct 1760180  T
Q  125 aatgcacgttctgccttatgagcattttggtgccctcctaacgcctgtgaagtagaaaattttctcttgcaaaataagcatgaaaaagacctcgagtcca 224  Q
    ||||||||||| ||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||| || ||||    
T  1760179 aatgcacgttccgccttataagcattttggtgccctcccaacgcctgtgaagtagtaaattttctcttgcaaaataaacatgaaaaagaccttgaatcca 1760080  T
Q  225 aattcttctctttgttcttgttctaattt 253  Q
    |||| ||||||||||||||||||||||||    
T  1760079 aatttttctctttgttcttgttctaattt 1760051  T

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Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 61 - 212
Target Start/End: Complemental strand, 1739192 - 1739041
Alignment:
Q  61 aaaataagggttaaagtgaggttctcctaaacctaaatcataccttagtttacgttgcttttttaatgcacgttctgccttatgagcattttggtgccct 160  Q
    ||||||||||||||   ||||||  ||||||||||| ||||||||| ||||| |||||||||  || |||||||||||||||||||| |||||||| ||     
T  1739192 aaaataagggttaagaagaggttgccctaaacctaattcatacctttgtttaagttgcttttgcaacgcacgttctgccttatgagcgttttggtgtcca 1739093  T
Q  161 cctaacgcctgtgaagtagaaaattttctcttgcaaaataagcatgaaaaag 212  Q
    |||||||| || |||||||||||||||| |||||||||||||||||||||||    
T  1739092 cctaacgcttgcgaagtagaaaattttcccttgcaaaataagcatgaaaaag 1739041  T

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Target: chr5; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 50 - 216
Target Start/End: Complemental strand, 1744546 - 1744380
Alignment:
Q  50 tttggataactaaaataagggttaaagtgaggttctcctaaacctaaatcataccttagtttacgttgcttttttaatgcacgttctgccttatgagcat 149  Q
    |||||||||||||||||||||||||   |||| |   ||||||||||  | ||| |  ||||| ||||||||| |||||||||||| | ||||||||| |    
T  1744546 tttggataactaaaataagggttaagaagaggctgctctaaacctaatacgtacttctgtttaagttgcttttgtaatgcacgttccgtcttatgagcgt 1744447  T
Q  150 tttggtgccctcctaacgcctgtgaagtagaaaattttctcttgcaaaataagcatgaaaaagacct 216  Q
    ||||||| || |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  1744446 tttggtgtccacctaacgcttgtgaagtagaaaattttcccttgcaaaataagcatgaaaaagacct 1744380  T

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Target: chr5; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 1763478 - 1763566
Alignment:
Q  95 aaatcataccttagtttacgttgcttttttaatgcacgttctgccttatgagcattttggtgccctcctaacgcctgtgaagtagaaaa 183  Q
    |||||||||||| ||||||||||||||| ||||||| |||| ||||||||||| ||||| |||||||||||||  ||||||||||||||    
T  1763478 aaatcatacctttgtttacgttgcttttctaatgcatgttccgccttatgagctttttgatgccctcctaacgtatgtgaagtagaaaa 1763566  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 214
Target Start/End: Complemental strand, 3167456 - 3167258
Alignment:
Q  25 ataataagaggatgtaaaaaagctatttggataactaaaataagggttaaagtgaggttctcctaaacctaaa---------tcataccttagtttacgt 115  Q
    ||||||||||| ||||||||   |||||||||||||||||||||||||||||| |||||  |||||||| |||         |||||| || ||||||||    
T  3167456 ataataagagggtgtaaaaagagtatttggataactaaaataagggttaaagtaaggttgccctaaaccaaaaacaccattttcatacttttgtttacgt 3167357  T
Q  116 tgcttttttaatgcacgttctgccttatgagcattttggtgccctcctaacgcctgtgaagtagaaaattttctcttgcaaaataagcatgaaaaagac 214  Q
    || |||| ||| |||||||| |||||||| ||||| || || ||||||||||| ||||| |||||||||||||||||||||||  | ||||||||||||    
T  3167356 tgtttttctaaggcacgttcagccttatgggcattctgatgtcctcctaacgcttgtgatgtagaaaattttctcttgcaaaaacaacatgaaaaagac 3167258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 97 - 236
Target Start/End: Original strand, 3156895 - 3157034
Alignment:
Q  97 atcataccttagtttacgttgcttttttaatgcacgttctgccttatgagcattttggtgccctcctaacgcctgtgaagtagaaaattttctcttgcaa 196  Q
    |||||||||| |||| |||||||||| ||| |||||||| ||||||||||| || ||||| ||||| ||||| |||||||||||||||| |||||| |||    
T  3156895 atcatacctttgtttccgttgcttttctaaagcacgttccgccttatgagcgttctggtgtcctcccaacgcttgtgaagtagaaaattgtctcttacaa 3156994  T
Q  197 aataagcatgaaaaagacctcgagtccaaattcttctctt 236  Q
    ||  |||||||||||||||| || ||| ||||||||||||    
T  3156995 aaggagcatgaaaaagaccttgaatccgaattcttctctt 3157034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 51 - 236
Target Start/End: Complemental strand, 2022982 - 2022788
Alignment:
Q  51 ttggataactaaaataagggttaaagtgaggttctcctaaacctaaa---------tcataccttagtttacgttgcttttttaatgcacgttctgcctt 141  Q
    |||||||||||||||||||||||||||||||||  |||||||| |||         ||||||||| |||||||||| |||| ||| | |||||| |||||    
T  2022982 ttggataactaaaataagggttaaagtgaggttgccctaaaccaaaagcaccactttcatacctttgtttacgttgtttttctaacgtacgttcagcctt 2022883  T
Q  142 atgagcattttggtgccctcctaacgcctgtgaagtagaaaattttctcttgcaaaataagcatgaaaaagacctcgagtccaaattcttctctt 236  Q
    ||| ||||| ||||| |||||||| || || ||||||||||||||||||||||||||  | |||||||||||| | || ||  ||||||||||||    
T  2022882 atgggcattctggtgtcctcctaaggcttgcgaagtagaaaattttctcttgcaaaaacaacatgaaaaagactttgaatctgaattcttctctt 2022788  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 97 - 198
Target Start/End: Original strand, 3139181 - 3139282
Alignment:
Q  97 atcataccttagtttacgttgcttttttaatgcacgttctgccttatgagcattttggtgccctcctaacgcctgtgaagtagaaaattttctcttgcaa 196  Q
    |||||||||| ||| ||||||||||| |||||| ||||| |||||||| || || || || ||||| |||||||||||||||||||||| ||||||||||    
T  3139181 atcatacctttgttgacgttgcttttctaatgcccgttccgccttatgtgcgttctgatgtcctcccaacgcctgtgaagtagaaaattgtctcttgcaa 3139280  T
Q  197 aa 198  Q
    ||    
T  3139281 aa 3139282  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 236
Target Start/End: Complemental strand, 23852261 - 23852122
Alignment:
Q  97 atcataccttagtttacgttgcttttttaatgcacgttctgccttatgagcattttggtgccctcctaacgcctgtgaagtagaaaattttctcttgcaa 196  Q
    |||||||||| |||| |||||||||| ||| | |||||| ||||||||||| || ||||| ||||| ||||| || |||||||||||||  ||||| |||    
T  23852261 atcatacctttgtttccgttgcttttctaaagtacgttccgccttatgagcgttctggtgtcctcccaacgcttgagaagtagaaaattgcctcttacaa 23852162  T
Q  197 aataagcatgaaaaagacctcgagtccaaattcttctctt 236  Q
    ||  |||||||||| || || || ||  ||||||||||||    
T  23852161 aaggagcatgaaaaggatcttgaatctgaattcttctctt 23852122  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 237
Target Start/End: Complemental strand, 23856829 - 23856688
Alignment:
Q  97 atcataccttagtttacgttgcttttttaatgcacgttctgccttatgagcattttggtgccctcctaacgcctgtgaagtagaaaattttctcttgca- 195  Q
    |||||| ||| |||| |||||||||| ||| | | |||| | ||||||||| || ||||| ||||| ||||  |||||||||||| | | |||||| ||     
T  23856829 atcatatctttgtttgcgttgcttttctaaagtatgttccgtcttatgagcgttctggtgtcctcccaacgattgtgaagtagaatagtgtctcttacac 23856730  T
Q  196 aaataagcatgaaaaagacctcgagtccaaattcttctcttt 237  Q
    ||| ||||||||||| || || || || ||||||| ||||||    
T  23856729 aaaaaagcatgaaaaggatcttgaatctaaattctcctcttt 23856688  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 7491189 - 7491257
Alignment:
Q  97 atcataccttagtttacgttgcttttttaatgcacgttctgccttatgagcattttggtgccctcctaa 165  Q
    ||||||||||  ||||||||| ||||  || |||||||| |||||||| |||||||| |||||||||||    
T  7491189 atcatacctttctttacgttgtttttccaacgcacgttccgccttatgggcattttgatgccctcctaa 7491257  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 7498938 - 7498978
Alignment:
Q  125 aatgcacgttctgccttatgagcattttggtgccctcctaa 165  Q
    |||||||||||||||||||| |||||||| |||||||||||    
T  7498938 aatgcacgttctgccttatgggcattttgatgccctcctaa 7498978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 196
Target Start/End: Original strand, 9012035 - 9012134
Alignment:
Q  97 atcataccttagtttacgttgcttttttaatgcacgttctgccttatgagcattttggtgccctcctaacgcctgtgaagtagaaaattttctcttgcaa 196  Q
    |||||||||| ||| || ||||||||  |||||||||||     |||| |||||||||||||| || ||||| |||| |||||||||||||  |||||||    
T  9012035 atcatacctttgttgacattgcttttcaaatgcacgttcctttctatgggcattttggtgcccacccaacgcttgtgcagtagaaaattttgccttgcaa 9012134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 7484447 - 7484549
Alignment:
Q  109 tttacgttgcttttttaatgcacgttctgccttatgagcattttggtgccctcctaacgcctgtgaagtagaaaattttctcttgcaaaataagcatgaa 208  Q
    ||||||||| ||||  | |||||||||||| ||||| |||||||| ||||||| |||| | ||| |||||||| |||  | ||||||| |  ||||||||    
T  7484447 tttacgttgtttttccattgcacgttctgctttatgggcattttgatgccctcttaacccttgtaaagtagaatattgccccttgcaataggagcatgaa 7484546  T
Q  209 aaa 211  Q
    |||    
T  7484547 aaa 7484549  T

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