View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6124_high_31 (Length: 203)
Name: NF6124_high_31
Description: NF6124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6124_high_31 |
 | |
|
| [»] scaffold0075 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0075 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0075
Description:
Target: scaffold0075; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 15775 - 15602
Alignment:
| Q |
18 |
aaatagtgcagctccttcatttaccagcaacactgatggtttcgtaaatagtctcagtactggtttatctcaaaagaagtttgaacaacatgtatccttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15775 |
aaatagtgcagctccttcatttaccagcaacactgatggtttcgtaaatagtctcagtactggtttatctcaaaagaagtttgaacaacatgtatccttg |
15676 |
T |
|
| Q |
118 |
cttcaacaatcaaatttcgttgcttaaacttccactccttctgtttccaatcatgtcagtgtctcacctatgct |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15675 |
cttcaacaatcaaatttcgttgcttaaacttccactccttctgtttccaatcatgtcagtgtctcacctgtgct |
15602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University