View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6124_high_32 (Length: 201)
Name: NF6124_high_32
Description: NF6124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6124_high_32 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 7e-88; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 41713914 - 41713747
Alignment:
| Q |
18 |
tgttatatgaaaggttaagccctttgagatcatgaagctctccaataacatctggaatcaccccatcaaatttatttcttgaaaaatcaatacttgcaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41713914 |
tgttatatgaaaggttaagccctttgagatcatgaagctctccaataacatctggaatctccccatcaaatttatttcttgaaaaatcaatacttgcaaa |
41713815 |
T |
|
| Q |
118 |
gatttttggaattttcacaagtggggttttgtttccttttgtcgccagatttccataatcatagtatt |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41713814 |
gatttttggaattttcacaagtggggttttgtttccttttgtcgccagatttccataatcatagtatt |
41713747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 164
Target Start/End: Original strand, 42123222 - 42123360
Alignment:
| Q |
26 |
gaaaggttaagccctttgagatcatgaagctctccaataacatctggaatcaccccatcaaatttatttcttgaaaaatcaatacttgcaaagatttttg |
125 |
Q |
| |
|
||||||||||||||| |||| |||| |||| ||||||| ||| ||||||| | || |||||||| |||||||| | |||||||||| |||| |||||| |
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| T |
42123222 |
gaaaggttaagccctatgagtgcatgtagctttccaatagcatttggaatctctccttcaaatttgtttcttgacatatcaatacttacaaacttttttg |
42123321 |
T |
|
| Q |
126 |
gaattttcacaagtggggttttgtttccttttgtcgcca |
164 |
Q |
| |
|
||||||| || |||| ||||| |||||||||| |||| |
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|
| T |
42123322 |
gaattttaacgagtgtcattttggttccttttgttgcca |
42123360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 42117474 - 42117583
Alignment:
| Q |
26 |
gaaaggttaagccctttgagatcatgaagctctccaataacatctggaatcaccccatcaaatttatttcttgaaaaatcaatacttgcaaagatttttg |
125 |
Q |
| |
|
|||||||||||||||||||| |||| || ||||||||| ||| ||||||| | || |||||||| ||| |||| ||||||||| || |||| || |||| |
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|
| T |
42117474 |
gaaaggttaagccctttgagtgcatggaggtctccaatagcatttggaatctctccctcaaatttgttttttgacaaatcaataattacaaaaatgtttg |
42117573 |
T |
|
| Q |
126 |
gaattttcac |
135 |
Q |
| |
|
|||||||||| |
|
|
| T |
42117574 |
gaattttcac |
42117583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 34240922 - 34240807
Alignment:
| Q |
18 |
tgttatatgaaaggttaagccctttgagatcatgaagctctccaataacatctggaatcaccccatcaaatttatttcttgaaaaatcaatacttgcaaa |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||| | ||||| ||||| ||| ||| |||||| | |||| ||| || |||||||| |||||||||||| |||| |
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|
| T |
34240922 |
tgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaacttgtttcttgagaaatcaatacttacaaa |
34240823 |
T |
|
| Q |
118 |
gatttttggaattttc |
133 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
34240822 |
cattgttggaattttc |
34240807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 34233149 - 34233035
Alignment:
| Q |
18 |
tgttatatgaaaggttaagccctttgagatcatgaagctctccaataacatctggaatcaccccatcaaatttatttcttgaaaaatcaatacttgcaaa |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||| | ||||| ||||| ||| ||| |||||| | |||| ||| || |||||||| |||||||||||| |||| |
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|
| T |
34233149 |
tgttatgtgaaaggttaagccctttgagtgcgtgaagttctcctatatcatttggaattcctccattaaacttgtttcttgagaaatcaatacttacaaa |
34233050 |
T |
|
| Q |
118 |
gatttttggaatttt |
132 |
Q |
| |
|
| || |||||||||| |
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|
| T |
34233049 |
gtttattggaatttt |
34233035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 42128638 - 42128754
Alignment:
| Q |
48 |
catgaagctctccaataacatctggaatcaccccatcaaatttatttcttgaaaaatcaatacttgcaaagatttttggaattttcacaagtggggtttt |
147 |
Q |
| |
|
|||||||||| |||| | ||| |||||| | || |||||||| |||||||| ||||||||| || ||||||| |||||||||||||| | || |||| |
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|
| T |
42128638 |
catgaagctcaccaaaatcatttggaatatctccttcaaatttgtttcttgacaaatcaataattacaaagatatttggaattttcaccaatgtcctttt |
42128737 |
T |
|
| Q |
148 |
gtttccttttgtcgcca |
164 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
42128738 |
gttcccttttgtcgcca |
42128754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 41444109 - 41444191
Alignment:
| Q |
48 |
catgaagctctccaataacatctggaatcaccccatcaaatttatttcttgaaaaatcaatacttgcaaagatttttggaatt |
130 |
Q |
| |
|
|||||||||| |||||||||| |||||| | || |||||||| |||| |||||||||||||||| |||||||| | |||||| |
|
|
| T |
41444109 |
catgaagctcaccaataacatttggaatgtctccttcaaatttgtttcctgaaaaatcaatacttacaaagattgtaggaatt |
41444191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 25523382 - 25523273
Alignment:
| Q |
26 |
gaaaggttaagccctttgagatcatgaagctctccaataacatctggaatcaccccatcaaatttatttcttgaaaaatcaatacttgcaaagatttttg |
125 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||| ||||||| | || |||||||| |||||||||||||||||| | |||| || ||| |
|
|
| T |
25523382 |
gaaaggttaagccctttgagtgcatgaagctctccaatagcatttggaatctctccttcaaatttgtttcttgaaaaatcaatagatacaaactttattg |
25523283 |
T |
|
| Q |
126 |
gaattttcac |
135 |
Q |
| |
|
|||||||||| |
|
|
| T |
25523282 |
gaattttcac |
25523273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 24140572 - 24140686
Alignment:
| Q |
26 |
gaaaggttaagccctttgagatcatgaagctctccaataacatctggaatcaccccatcaaatttatttcttgaaaaatcaatacttgcaaagatttttg |
125 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||| ||| ||| ||||||| | || |||||||| |||||||| | ||| |||||| |||| |||||| |
|
|
| T |
24140572 |
gaaaggttaatccctttgagtgcatgaagctctccgatagcatttggaatctctccttcaaatttgtttcttgacatatcgatacttacaaacttttttg |
24140671 |
T |
|
| Q |
126 |
gaattttcacaagtg |
140 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
24140672 |
gaattttcaccagtg |
24140686 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 11117885 - 11118016
Alignment:
| Q |
26 |
gaaaggttaagccctttgagatcatgaagctctccaataacatctggaatcaccccatcaaatttatttcttgaaaaatcaatacttgcaaagatttttg |
125 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||| ||| || |||| | || |||||||| |||||||| |||||||||||| | || || ||| |
|
|
| T |
11117885 |
gaaagattaagccctttgagtgcatgaagctctccaatagcatttgtaatctctccttcaaatttgtttcttgacaaatcaatacttactaactttattg |
11117984 |
T |
|
| Q |
126 |
gaattttcacaagtggggttttgtttcctttt |
157 |
Q |
| |
|
|||||||||| |||| ||||||| |||||| |
|
|
| T |
11117985 |
gaattttcaccagtgtcattttgttccctttt |
11118016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 164
Target Start/End: Original strand, 8522845 - 8522983
Alignment:
| Q |
26 |
gaaaggttaagccctttgagatcatgaagctctccaataacatctggaatcaccccatcaaatttatttcttgaaaaatcaatacttgcaaagatttttg |
125 |
Q |
| |
|
||||||||||||||| ||| |||||||||| ||||||| | ||||||| | || |||||||| |||||||| ||||||||| || ||||| | |||| |
|
|
| T |
8522845 |
gaaaggttaagccctatgattgcatgaagctcaccaataatctttggaatctcgccttcaaatttgtttcttgacaaatcaataattacaaagttgtttg |
8522944 |
T |
|
| Q |
126 |
gaattttcacaagtggggttttgtttccttttgtcgcca |
164 |
Q |
| |
|
|||||||||| ||| ||||||| ||||||||||||| |
|
|
| T |
8522945 |
gaattttcactagtttcattttgttcccttttgtcgcca |
8522983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 32682242 - 32682150
Alignment:
| Q |
48 |
catgaagctctccaataacatctggaatcaccccatcaaatttatttcttgaaaaatcaatacttgcaaagatttttggaattttcacaagtg |
140 |
Q |
| |
|
|||||||||| |||||| ||| ||||||| | || |||||| | |||||||| |||||||||||| ||||| || ||||||||||||| |||| |
|
|
| T |
32682242 |
catgaagctccccaatagcatttggaatctctccttcaaatctgtttcttgacaaatcaatacttacaaagtttcttggaattttcactagtg |
32682150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 11994748 - 11994642
Alignment:
| Q |
26 |
gaaaggttaagccctttgagatcatgaagctctccaataacatctggaatcaccccatcaaatttatttcttgaaaaatcaatacttgcaaagatttttg |
125 |
Q |
| |
|
||||||||||||||| | || | |||||||| ||||||||| ||||||| | || |||||||| |||||||| ||||||||| || | ||||| |||| |
|
|
| T |
11994748 |
gaaaggttaagccctataagtgcttgaagctcatcaataacatttggaatctctccttcaaatttgtttcttgacaaatcaataattactaagatgtttg |
11994649 |
T |
|
| Q |
126 |
gaatttt |
132 |
Q |
| |
|
||||||| |
|
|
| T |
11994648 |
gaatttt |
11994642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 12248181 - 12248287
Alignment:
| Q |
26 |
gaaaggttaagccctttgagatcatgaagctctccaataacatctggaatcaccccatcaaatttatttcttgaaaaatcaatacttgcaaagatttttg |
125 |
Q |
| |
|
||||||||||||||| | || | |||||||| ||||||||| ||||||| | || |||||||| |||||||| ||||||||| || | ||||| |||| |
|
|
| T |
12248181 |
gaaaggttaagccctataagtgcttgaagctcatcaataacatttggaatctctccttcaaatttgtttcttgacaaatcaataattactaagatgtttg |
12248280 |
T |
|
| Q |
126 |
gaatttt |
132 |
Q |
| |
|
||||||| |
|
|
| T |
12248281 |
gaatttt |
12248287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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